Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun7g04074 | ATGGTTCTATCAAACAAGAAACTGAAGCTTAAGCTCAGAGCTGAATTGTCCCAACAACAAAATGATATCAACGAAGTTCCTTCATCTTCGAACTCTCTCAAATCTCTTTTGGACGCTGCCACCCCCACACCCAGATTGTCCAAGCGAGACAAACGCCGAAAGCTTCGATCTTCCGAACACCCTCCAAAAGAAACCAACAAGGAAACTGAAACAGAGGGTTCACCCAAGAAGAAAAACAAGAAGAGAAAGAGGAAGGTAGAGGGCGATGACGTGGCAAATGAAGTTCCCGACAACACACCCCATAACAACAGTAAGAAGAAAAAGAAGAAGAAGAAGCTGAAGAAGAACAAGAAGAAAGAAACCAAAACCGCGGAGGAAAATGGTTCTAATGGTGGAGGGGAAATGCCTGAGGCCACAGAGTTAACCAAGACCAATACAACTACCAGTCAAGACCATGGTGATGTCCCTACAAAGGTTTATGTTGGAGGAATTCCTTATTATTCAACGGAGGATGATATTCGAAGTTATTTTGAAAGCTGTGGCACCATAACTGAAGTTGATTGCATGTATTTTCCTGAAAGTGGCAAGTTTAGAGGGATTGCCATTATTAGTTTTAAGACCGAAGCAGCAGCTAAACGAGCATTGGCTCTTGATGGAGCTGACATGGGAGGGCTCTTTCTTAAAATCCAACCATATAAAGCAACGCGAGCCAATAAAACATCGGATTTTGCTCCAGAAATTTTGGAGGGGTACAATAGAGTATATGTTGGGAATTTGTCATGGGATATAACAGAGGAAGAACTGAGGAAATTCTTCAATAATTGTGAGATAACGTCCGTAAGATTTGGTATGGATAAGGAGACAGGAGAGTTTCGAGGGTATGCTCATGTGGATTTCGGTGATAGTCAGTCACTGAAAACAGCACTTACATTGGACCAAAATGTTTTGTTTGGGAGACCTGTCAAGATAAGTTGTGCAGTTCCTCTGAAGAAAAAACCAGGAACTCACAAAAGCTCGACAGTTAATGGAGCTGATGGTGATAAATCAACTTCCTCAGGAAGTGGCAAGATGAATGGAGCTGATGGTGAAAAGCCAAGTTCCACAGTAAGTGGCAAGATGAAGAGAAGGACGTGCTATGAATGTGGTGAGAAAGGACATGGTTTTTCGGAATGTCCTAAGAAACAAACAGATGTTGCAGCTACAACCTAA | 1209 | 0.4227 | MVLSNKKLKLKLRAELSQQQNDINEVPSSSNSLKSLLDAATPTPRLSKRDKRRKLRSSEHPPKETNKETETEGSPKKKNKKRKRKVEGDDVANEVPDNTPHNNSKKKKKKKKLKKNKKKETKTAEENGSNGGGEMPEATELTKTNTTTSQDHGDVPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCMYFPESGKFRGIAIISFKTEAAAKRALALDGADMGGLFLKIQPYKATRANKTSDFAPEILEGYNRVYVGNLSWDITEEELRKFFNNCEITSVRFGMDKETGEFRGYAHVDFGDSQSLKTALTLDQNVLFGRPVKISCAVPLKKKPGTHKSSTVNGADGDKSTSSGSGKMNGADGEKPSSTVSGKMKRRTCYECGEKGHGFSECPKKQTDVAATT | 402 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun7g04074 | 402 | CDD | RRM1_PHIP1 | 159 | 230 | IPR034361 | - | |
Viun7g04074 | 402 | SUPERFAMILY | Retrovirus zinc finger-like domains | 370 | 397 | IPR036875 | GO:0003676|GO:0008270 | |
Viun7g04074 | 402 | MobiDBLite | consensus disorder prediction | 103 | 118 | - | - | |
Viun7g04074 | 402 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 252 | 328 | IPR000504 | GO:0003723 | |
Viun7g04074 | 402 | MobiDBLite | consensus disorder prediction | 18 | 138 | - | - | |
Viun7g04074 | 402 | Coils | Coil | 103 | 127 | - | - | |
Viun7g04074 | 402 | ProSiteProfiles | Zinc finger CCHC-type profile. | 378 | 393 | IPR001878 | GO:0003676|GO:0008270 | |
Viun7g04074 | 402 | MobiDBLite | consensus disorder prediction | 57 | 76 | - | - | |
Viun7g04074 | 402 | MobiDBLite | consensus disorder prediction | 333 | 402 | - | - | |
Viun7g04074 | 402 | SUPERFAMILY | RNA-binding domain, RBD | 148 | 238 | IPR035979 | GO:0003676 | |
Viun7g04074 | 402 | Gene3D | - | 248 | 335 | IPR012677 | - | |
Viun7g04074 | 402 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 157 | 234 | IPR000504 | GO:0003723 | |
Viun7g04074 | 402 | MobiDBLite | consensus disorder prediction | 335 | 365 | - | - | |
Viun7g04074 | 402 | Gene3D | - | 342 | 401 | - | - | |
Viun7g04074 | 402 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 68 | 233 | - | - | |
Viun7g04074 | 402 | MobiDBLite | consensus disorder prediction | 18 | 38 | - | - | |
Viun7g04074 | 402 | Gene3D | - | 89 | 230 | IPR012677 | - | |
Viun7g04074 | 402 | SMART | rrm1_1 | 158 | 230 | IPR000504 | GO:0003723 | |
Viun7g04074 | 402 | SMART | rrm1_1 | 253 | 324 | IPR000504 | GO:0003723 | |
Viun7g04074 | 402 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 254 | 321 | IPR000504 | GO:0003723 | |
Viun7g04074 | 402 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 159 | 225 | IPR000504 | GO:0003723 | |
Viun7g04074 | 402 | SUPERFAMILY | RNA-binding domain, RBD | 245 | 338 | IPR035979 | GO:0003676 | |
Viun7g04074 | 402 | MobiDBLite | consensus disorder prediction | 376 | 391 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun7g04074 | Viun-Chr7 | 39873758 | 39876016 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun7g04074 | 157 | 354 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 25.837 | 1.15e-07 | 52.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun7g04074 | - | - | gmx:100814693 | 578.556 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Viun7g04074 | 7 | 39873758 | 39876016 | Viun7g04074 | 7 | 39873758 | 39876016 | ECH |