Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g04074 ATGGTTCTATCAAACAAGAAACTGAAGCTTAAGCTCAGAGCTGAATTGTCCCAACAACAAAATGATATCAACGAAGTTCCTTCATCTTCGAACTCTCTCAAATCTCTTTTGGACGCTGCCACCCCCACACCCAGATTGTCCAAGCGAGACAAACGCCGAAAGCTTCGATCTTCCGAACACCCTCCAAAAGAAACCAACAAGGAAACTGAAACAGAGGGTTCACCCAAGAAGAAAAACAAGAAGAGAAAGAGGAAGGTAGAGGGCGATGACGTGGCAAATGAAGTTCCCGACAACACACCCCATAACAACAGTAAGAAGAAAAAGAAGAAGAAGAAGCTGAAGAAGAACAAGAAGAAAGAAACCAAAACCGCGGAGGAAAATGGTTCTAATGGTGGAGGGGAAATGCCTGAGGCCACAGAGTTAACCAAGACCAATACAACTACCAGTCAAGACCATGGTGATGTCCCTACAAAGGTTTATGTTGGAGGAATTCCTTATTATTCAACGGAGGATGATATTCGAAGTTATTTTGAAAGCTGTGGCACCATAACTGAAGTTGATTGCATGTATTTTCCTGAAAGTGGCAAGTTTAGAGGGATTGCCATTATTAGTTTTAAGACCGAAGCAGCAGCTAAACGAGCATTGGCTCTTGATGGAGCTGACATGGGAGGGCTCTTTCTTAAAATCCAACCATATAAAGCAACGCGAGCCAATAAAACATCGGATTTTGCTCCAGAAATTTTGGAGGGGTACAATAGAGTATATGTTGGGAATTTGTCATGGGATATAACAGAGGAAGAACTGAGGAAATTCTTCAATAATTGTGAGATAACGTCCGTAAGATTTGGTATGGATAAGGAGACAGGAGAGTTTCGAGGGTATGCTCATGTGGATTTCGGTGATAGTCAGTCACTGAAAACAGCACTTACATTGGACCAAAATGTTTTGTTTGGGAGACCTGTCAAGATAAGTTGTGCAGTTCCTCTGAAGAAAAAACCAGGAACTCACAAAAGCTCGACAGTTAATGGAGCTGATGGTGATAAATCAACTTCCTCAGGAAGTGGCAAGATGAATGGAGCTGATGGTGAAAAGCCAAGTTCCACAGTAAGTGGCAAGATGAAGAGAAGGACGTGCTATGAATGTGGTGAGAAAGGACATGGTTTTTCGGAATGTCCTAAGAAACAAACAGATGTTGCAGCTACAACCTAA 1209 0.4227 MVLSNKKLKLKLRAELSQQQNDINEVPSSSNSLKSLLDAATPTPRLSKRDKRRKLRSSEHPPKETNKETETEGSPKKKNKKRKRKVEGDDVANEVPDNTPHNNSKKKKKKKKLKKNKKKETKTAEENGSNGGGEMPEATELTKTNTTTSQDHGDVPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCMYFPESGKFRGIAIISFKTEAAAKRALALDGADMGGLFLKIQPYKATRANKTSDFAPEILEGYNRVYVGNLSWDITEEELRKFFNNCEITSVRFGMDKETGEFRGYAHVDFGDSQSLKTALTLDQNVLFGRPVKISCAVPLKKKPGTHKSSTVNGADGDKSTSSGSGKMNGADGEKPSSTVSGKMKRRTCYECGEKGHGFSECPKKQTDVAATT 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g04074 402 CDD RRM1_PHIP1 159 230 IPR034361 -
Viun7g04074 402 SUPERFAMILY Retrovirus zinc finger-like domains 370 397 IPR036875 GO:0003676|GO:0008270
Viun7g04074 402 MobiDBLite consensus disorder prediction 103 118 - -
Viun7g04074 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 328 IPR000504 GO:0003723
Viun7g04074 402 MobiDBLite consensus disorder prediction 18 138 - -
Viun7g04074 402 Coils Coil 103 127 - -
Viun7g04074 402 ProSiteProfiles Zinc finger CCHC-type profile. 378 393 IPR001878 GO:0003676|GO:0008270
Viun7g04074 402 MobiDBLite consensus disorder prediction 57 76 - -
Viun7g04074 402 MobiDBLite consensus disorder prediction 333 402 - -
Viun7g04074 402 SUPERFAMILY RNA-binding domain, RBD 148 238 IPR035979 GO:0003676
Viun7g04074 402 Gene3D - 248 335 IPR012677 -
Viun7g04074 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 234 IPR000504 GO:0003723
Viun7g04074 402 MobiDBLite consensus disorder prediction 335 365 - -
Viun7g04074 402 Gene3D - 342 401 - -
Viun7g04074 402 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 68 233 - -
Viun7g04074 402 MobiDBLite consensus disorder prediction 18 38 - -
Viun7g04074 402 Gene3D - 89 230 IPR012677 -
Viun7g04074 402 SMART rrm1_1 158 230 IPR000504 GO:0003723
Viun7g04074 402 SMART rrm1_1 253 324 IPR000504 GO:0003723
Viun7g04074 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 321 IPR000504 GO:0003723
Viun7g04074 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 225 IPR000504 GO:0003723
Viun7g04074 402 SUPERFAMILY RNA-binding domain, RBD 245 338 IPR035979 GO:0003676
Viun7g04074 402 MobiDBLite consensus disorder prediction 376 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g04074 Viun-Chr7 39873758 39876016 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g04074 157 354 Eukaryotic Initiation Factors Gene Family AT2G36660 25.837 1.15e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g04074 - - gmx:100814693 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g04074 7 39873758 39876016 Viun7g04074 7 39873758 39876016 ECH