Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g04054 ATGGCATCTCAGACGAGGAAGAGAGTGGACGCTGTTGATTCTCGCTCTGCTTCCGTTCTAGTTCGTGCTAAAGATGGCAGTGCTTTTGCGCGATGTGACGAGTGCAAGAAGAATGTGCCGGTGGCACTCATCGACATGCACAATTGCAGCCTTGAGGCTAAAATTAAAATGAACCTTGATGCGCAGGTTGTGGACCAGGCTGCCGAACCTAAGAAGCAAGAGAGGAAGAAACCCAAATCTAAAGAGCCAAAGGCAAAAAAGGCTAAGGTAGAGAAGGTAAAGAAGGTCAAGGATCCTAACAAGCCTAAGCGTCCTTCCACGGCCTTCTTTGTCTTTTTGGATGAGTTTAGAAAAACGTTTAAGGAAGCTAATCCTGATTCGAAGGATGTTAAAAGGGTTGGGAAGGAGGCTGGTGAGAAATGGAGGTCTATGACTGACGAAGATAAGAAGCCTTATTTGGATAAGGTTGCTGAACTCAAGGCAGAATATGAGAAGGCTATGGAAAGCTATAAAGCTGGTGAAGTTGAAGCTAATGAAGCTGGATCTGATAAGGAAACTGCTACAAAAGAAGTGGAAGAAGAGTTAACCGATGAAGAGTAG 600 0.4483 MASQTRKRVDAVDSRSASVLVRAKDGSAFARCDECKKNVPVALIDMHNCSLEAKIKMNLDAQVVDQAAEPKKQERKKPKSKEPKAKKAKVEKVKKVKDPNKPKRPSTAFFVFLDEFRKTFKEANPDSKDVKRVGKEAGEKWRSMTDEDKKPYLDKVAELKAEYEKAMESYKAGEVEANEAGSDKETATKEVEEELTDEE 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g04054 199 CDD HMG-box_AtHMGB1-like 103 163 - -
Viun7g04054 199 MobiDBLite consensus disorder prediction 84 102 - -
Viun7g04054 199 Coils Coil 156 176 - -
Viun7g04054 199 Gene3D High mobility group box domain 97 173 IPR036910 -
Viun7g04054 199 MobiDBLite consensus disorder prediction 172 191 - -
Viun7g04054 199 Pfam HMG (high mobility group) box 102 171 IPR009071 -
Viun7g04054 199 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 4 195 - -
Viun7g04054 199 SMART hmgende2 101 172 IPR009071 -
Viun7g04054 199 MobiDBLite consensus disorder prediction 172 199 - -
Viun7g04054 199 MobiDBLite consensus disorder prediction 66 103 - -
Viun7g04054 199 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 102 171 IPR009071 -
Viun7g04054 199 FunFam high mobility group B protein 7 isoform X1 97 173 - -
Viun7g04054 199 SUPERFAMILY HMG-box 93 174 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g04054 Viun-Chr7 39756630 39758363 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Viun7g04054 HMG_box 5e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g04054 K25507 - gmx:100810345 275.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g04054 7 39756630 39758363 Viun7g04054 7 39756630 39758363 ECH