Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g04052 ATGGATGAGTGTATATATATTAGTTCGTCAGATGATGATGAGTTGGAGGAGATAGATCCGCAATGGGCTACAATTACTGAGAGGAGTTCAGACTATGGTAGGCGGGATAATTCTTCGAGAGGGGCTAATAGTTCAAACCTTAGTTCTTCTAGTGTTTATAATCATTCACAAATCAAACCTCATACACTACCTGTGTCCAGTACCAATGCACTGAACCACAGAATTGAACAAAGAGATGAACCTTCCTACCATGCTCAGAATGGAAACAGAAGTATGCAAGCTTTCAAGAGGACCCTTCCTTCAACTCTTCAGCCTTCTGCAACAAGGGCTCTTCCTTCTCCTTTATTTGTGTCAGACATCAGATCAAGCAGCTTAAAAGATAACACAGGCACTAGTCATGTTCATGATGCATTTAAGAATCGTCGCCAGGGAGTAGGGCCTAGCATATCCGGTGACAGGGGCTACATTCGTGACAGTCTTATCAGGGGCCATGACGAAGGTCATTCATTGTATCAAAATGGTGGGAACAGGATTCTTCCACCATCTTTGGTGCTTGGAAAGGCCATAACTCCACACTTTGCAATTTCTAGTGAATCTGCATATCGTTCTGGAATAGGTGATGAAAGGTCTGCTGAAAGTGATGAGAGACTTATTTATGAGGCAGCATTACAGGATATCAGTCAACCTAAAACAGAACATGACTTACCTGCTGGTGTATTGTCTGTCTCTCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGCCTTGGGAAGACAGTATCAATGATTTCACTCATTCTGGCATTGAGGTCATTACAGTCAAAATCAAAAACAGATGATGTGCGCAATTATAAAACTGAAGCTTTTAATTTGGATGATGATGATGACAACGGTGGTATAGATGTGGAAAAGCATAAAAATAGTGTGGAAGCTGATGATTTGTTTCCTAATAGAGAACCTAGCAGTTCAATACATGCACCTAGTAGAAAAAGGCCAGCTGCTGGTACCCTAGTTGTCTGCCCTGCCAGTGTTATGCGGCAGTGGGCCAGGGAACTTGATGAAAAAGTTGGAGATGAAAAGCTTTCTGTTTTAGTTTATCATGGGGGCAGTAGGACTAAGAATCATCTAGAACTTGCAAAATTTGATGTGGTTCTAACAACATACTCTATTGTGACTAATGAAGTTCCTAAGCAACCATTAGTTGATGATGATGATATTGAGGACAAAAATGGGGAAAGGTTTGGGTTATCCTCTGAGTTTACTGTTAAAAAAAGGAAAAAACCAATTAACGGAAGTAAGAAGGGTAAAAAGGGTAGAAAAAGAATTGACAGTTCTATGATATGTCCTTCTGGCCCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAGGCTCAAACAATAAAAAATCATAGAACTCAAGTGGCTAGAGCTTGCTGCAGCCTTAGAGCCAAAAGAAGGTGGTGCTTATCTGGAACGCCTATTCAAAATACTATTGATGATTTGTATAGCTACTTTAGATTCTTGAAGTATGATCCTTATGCTGCATATAAATCATTCTACAACACCATAAAGGTTCCTATTTCCCGAGATCCCATTCAAGGTTACAAGAAACTTCAAGCAGTTTTAAGGGCCATAATGCTACGTCGTACAAAAGGAACTTTGCTTGATGGGAAGCCAATAATCAATTTGCCTCCTAAAACAATTGAGCTCAGTAGTGTGGATTTCTCCGTTGAGGAGCGAGCCTTCTATACTAAGTTGGAATCAGACTCACGCACTCAATTTAAGGCATATGCTGCTGCTGGGACAGTGAACCAAAACTATGCTAATATTCTTTTAATGCTCTTACGTCTTCGACAGGCTTGTGATCACCCACGTCTTGTTAAAGATTTCGATTCTGATCCTGTTGGGAAGGATTCTGTTGAAATGGCGAAATCTCTTCCACGGGAATTGCTGATTAATCTGTTTACTTGTTTGGACGCAACCTTTACCATCTGTCATGTTTGCAATGATCCCCCTCATGGCCCTGTTATTACAATGTGCGGCCATGTTTTCTGTTATGAATGTGTACAGGAATATTTGTCTGGTGATGATAATACGTGCCCTGCTGTTAATTGTAAAGAAATAATCGGTGATGATCTTGTTTTCTCCAAAGTTACTTTGAAGAGTTGTATCTCTGATGATGGTGGCACTTCTAGTTCTTCAGATTCACATCTTAGTGATTATTTGCTAGTGCAGCGAGATGATTACATTTCATCTAAAGTCAAAGCTGTTCTTGAGGTTTTGCAGTCAAATTGTAACGTGAAAATATCTAATTCTGACTTATCGAACTCTGGATGTTGTAGAGATTTGCCGTCATCTTCTGTTGATCTAGATCTTGATGACAATGATTCAGAGGCTAGGGTTGCAAAACACACAAGAAAGTATTCAGAGTCCACAACTCAAGGACCGATAAAGGCTATAGTTTTTTCCCAGTGGACTAGCATGTTGGATTTAGTTGAGACATCATTGTGTCAATTTGGTATACTGTACAGGAGACTTGATGGTAGGATGACTCTGGCTGCAAGGGACAAAGCTGTTAGGGATTTCAATACTGAACCTGAGATAACTGTTATGCTGATGTCACTAAAGGCAGGAAATCTTGGTTTGAATATGGTTGCTGCTTGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCCCATAGAATTGGGCAAACTCGTCCTGTTACTGTGACAAGGATTACTATAAAAAATACCGTTGAAGATCGGATACTGTCTCTTCAGGACGAAAAGCGAAAAATGGTTGCATCTGCTTTTGGGGAAGACCATGCTGGTGGGTCTGGAACTCGCCTTACAGTGGATGATCTGAAATATCTCTTCATGGTCTAG 2982 0.4054 MDECIYISSSDDDELEEIDPQWATITERSSDYGRRDNSSRGANSSNLSSSSVYNHSQIKPHTLPVSSTNALNHRIEQRDEPSYHAQNGNRSMQAFKRTLPSTLQPSATRALPSPLFVSDIRSSSLKDNTGTSHVHDAFKNRRQGVGPSISGDRGYIRDSLIRGHDEGHSLYQNGGNRILPPSLVLGKAITPHFAISSESAYRSGIGDERSAESDERLIYEAALQDISQPKTEHDLPAGVLSVSLLRHQKIALAWMLQKETKSLHCLGGILADDQGLGKTVSMISLILALRSLQSKSKTDDVRNYKTEAFNLDDDDDNGGIDVEKHKNSVEADDLFPNREPSSSIHAPSRKRPAAGTLVVCPASVMRQWARELDEKVGDEKLSVLVYHGGSRTKNHLELAKFDVVLTTYSIVTNEVPKQPLVDDDDIEDKNGERFGLSSEFTVKKRKKPINGSKKGKKGRKRIDSSMICPSGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAAYKSFYNTIKVPISRDPIQGYKKLQAVLRAIMLRRTKGTLLDGKPIINLPPKTIELSSVDFSVEERAFYTKLESDSRTQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDFDSDPVGKDSVEMAKSLPRELLINLFTCLDATFTICHVCNDPPHGPVITMCGHVFCYECVQEYLSGDDNTCPAVNCKEIIGDDLVFSKVTLKSCISDDGGTSSSSDSHLSDYLLVQRDDYISSKVKAVLEVLQSNCNVKISNSDLSNSGCCRDLPSSSVDLDLDDNDSEARVAKHTRKYSESTTQGPIKAIVFSQWTSMLDLVETSLCQFGILYRRLDGRMTLAARDKAVRDFNTEPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKNTVEDRILSLQDEKRKMVASAFGEDHAGGSGTRLTVDDLKYLFMV 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g04052 993 ProSitePatterns Zinc finger RING-type signature. 702 711 IPR017907 -
Viun7g04052 993 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 452 583 - -
Viun7g04052 993 Gene3D - 341 426 IPR038718 -
Viun7g04052 993 MobiDBLite consensus disorder prediction 1 20 - -
Viun7g04052 993 Gene3D - 586 992 IPR027417 -
Viun7g04052 993 SMART ring_2 687 725 IPR001841 -
Viun7g04052 993 ProSiteProfiles Zinc finger RING-type profile. 687 726 IPR001841 -
Viun7g04052 993 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 822 988 IPR001650 -
Viun7g04052 993 Gene3D - 449 584 IPR038718 -
Viun7g04052 993 Gene3D - 217 302 IPR038718 -
Viun7g04052 993 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 680 737 IPR013083 -
Viun7g04052 993 Pfam SNF2-related domain 247 649 IPR000330 GO:0005524|GO:0140658
Viun7g04052 993 Pfam Helicase conserved C-terminal domain 838 935 IPR001650 -
Viun7g04052 993 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 580 992 IPR027417 -
Viun7g04052 993 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 337 424 - -
Viun7g04052 993 MobiDBLite consensus disorder prediction 125 153 - -
Viun7g04052 993 SMART helicmild6 852 935 IPR001650 -
Viun7g04052 993 MobiDBLite consensus disorder prediction 1 66 - -
Viun7g04052 993 SUPERFAMILY RING/U-box 685 743 - -
Viun7g04052 993 CDD DEXDc_SHPRH-like 244 571 - -
Viun7g04052 993 MobiDBLite consensus disorder prediction 36 66 - -
Viun7g04052 993 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 571 IPR027417 -
Viun7g04052 993 SMART ultradead3 240 550 IPR014001 -
Viun7g04052 993 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 48 992 - -
Viun7g04052 993 Pfam Zinc finger, C3HC4 type (RING finger) 687 723 IPR018957 GO:0046872
Viun7g04052 993 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 259 533 IPR014001 -
Viun7g04052 993 CDD SF2_C_SNF 840 944 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g04052 Viun-Chr7 39741329 39751468 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g04052 1 893 RAD5 or RAD16-like Gene Family AT1G50410 53.879 0.0 877
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun7g04052 SNF2_N 3.5e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g04052 - - gmx:100795142 1569.29