Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g04019 ATGATGTCTTCCGGCGGGGACAGTGGGAAGCCATTTTTCTGTCACGTGTGCACTCAGAGGATCACGTGCACCGATGAGTCGGAACCGTTCTGCCCGATCTGTCTGGAAGGTTTCGTGGAGGAATGGAACCCTAATAACCATAGTCATAACCCTAACCCTAATTTCACCCATGAGAGTGGGGGGGAATCTATGGATCCCGAATTCCCGTTCGATTTAATCGATACCATGCTCCCTCTCTTGCTCAACGCGGGTTCCAGGACCCGGCGCGAAGCCGCCGACATGTTCGACCCAAGGACCTACCTCCAGAACTACCTGCAGAACCTTCGCGCCGATGGCGCTAACATTCAATTCTCCTTCGGCCAGAATTCCGACACGGGGTTCCGCCCCAACCCCCCGCCGAACCTAGGCGACTACTATCTCGGCCCCGGCTTCGAGCAGTTGATTCAGCTGCTTGCCGACAACGACCCTAACCGTTATGGCACGCCACCGGCCGCAAAGGACGCCGTCGAGAATCTCCCCACTATCACCGTCGACGACGAGTTGCTGAACTCGGAAATGAACCAATGCGCGGTCTGCCAGGACGAGTTCGAGAAGGGCACGCAGGTGACGCAGATGCCGTGCAAGCACGCGTATCATGCTGACTGCCTCATTCCTTGGCTTAAGCTGCATAACTCTTGCCCCGTTTGTCGGTATGAATTGCCCACCGATGACGCGGATTATGAGAATCGGACGCGGACCAGTGGCGACGATGGTGGGTCGAGGTCTGATGTGAGCGATAGTGGCAGTGGCGCGAGTGGGGGGAATGGGAGACCTGTTCACCGGACTGTTAGAATATATTTGCGGCATCCTTTTGATGGAGGTGACTCTGCGCAGGACAGTCCCGAAAGGGGATGGGAAGGTTGGGATTGA 909 0.5655 MMSSGGDSGKPFFCHVCTQRITCTDESEPFCPICLEGFVEEWNPNNHSHNPNPNFTHESGGESMDPEFPFDLIDTMLPLLLNAGSRTRREAADMFDPRTYLQNYLQNLRADGANIQFSFGQNSDTGFRPNPPPNLGDYYLGPGFEQLIQLLADNDPNRYGTPPAAKDAVENLPTITVDDELLNSEMNQCAVCQDEFEKGTQVTQMPCKHAYHADCLIPWLKLHNSCPVCRYELPTDDADYENRTRTSGDDGGSRSDVSDSGSGASGGNGRPVHRTVRIYLRHPFDGGDSAQDSPERGWEGWD 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g04019 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 236 IPR013083 -
Viun7g04019 302 MobiDBLite consensus disorder prediction 238 302 - -
Viun7g04019 302 SMART ring_2 189 229 IPR001841 -
Viun7g04019 302 MobiDBLite consensus disorder prediction 238 252 - -
Viun7g04019 302 FunFam E3 ubiquitin-protein ligase RING1-like 150 236 - -
Viun7g04019 302 SUPERFAMILY RING/U-box 168 236 - -
Viun7g04019 302 ProSiteProfiles Zinc finger RING-type profile. 189 230 IPR001841 -
Viun7g04019 302 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 90 234 - -
Viun7g04019 302 Pfam Ring finger domain 187 230 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g04019 Viun-Chr7 39608429 39610851 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g04019 98 245 C3H Transcription Factor Family AT5G01980 41.216 3.21e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g04019 K11982 - gmx:100785289 402.905