Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g04012 ATGGAGAACGACACCGCCGCCGCCGCCGCCGCCGCTAACAATAACACCGCCACCGCGAAAGTAGGTTCAGGAGGAGTGAAATCGAACAATCATAACCTAGAGGAGGAGCATTCCAATTTGAATGGCGAGGAGCACATGGCAGAGCAAGTGGAGGCGGAAGAGGAAGAAGATCGAGAAGCCGATGTAGGTGAAGGAGAACCAACTGGATCTGCGCTCAACCCTCGCCAACCTACGCGAACCCCTTTCACTAATCTCAGCCAGGTCGATGCTGACCTTGCTCTCGCTCGAACCCTCCAGGAGCAGGAAAGGGCATACATGATGCTGAGAATGAATAATGAAGGAAGTGATTATGGTAGTTGGGAAGGTGAAAGCTATTTGCATGATGATGGAGATGATTTTGATGATCTACATGATGGTACTGATGTGGATGTGGATGTGGATGTGGATGAGGATGATGAGGATGATGATGATGATGATGACGATGATGAAGATGATGATAATGAGGAGTATGAAGATGAAGATGCATTTGATGTCCATGCTAGTGCTGGAGAACATGATAATCCCAGCATTGAATTTGACCCAGATGTTTTTTCAAGCGATGAAGCTTATGCTAGAGCATTACAGGAAGCTGAAGAGAGGGAGATGGCAGCTAGATTGTTGGCTCTTGCTGGGATAAATGATCGGGAGGCAGAGGACGTAGAGGAACATGGTGCTAATTCTCAGGATGCTTGGGAGGACGTTGATCCAGATGAACTTTCATACGAGGAATTACTGGCATTGGGTGAAGTAGTTGGAACCGAGAGCAGAGGACTTTCAACTGATACTATTGCCGGTTTGCCTTCACTCAACTACAAGGTTGGGAGTGATCAGCATGGAAGCAATGATTCGTGCGTCATTTGCCGGGTGGACTTTGAGGATGGTGATTCTTTAACACATCTTTCCTGCAAACATCTGTACCATCCTGAGTGTATCAACAATTGGTTGAAAATAAACAAGGTTTGCCCAGTCTGTAGTACCGAGGTATCTGCTTCTGGGAGCAACTTGTAG 1047 0.4718 MENDTAAAAAAANNNTATAKVGSGGVKSNNHNLEEEHSNLNGEEHMAEQVEAEEEEDREADVGEGEPTGSALNPRQPTRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNEGSDYGSWEGESYLHDDGDDFDDLHDGTDVDVDVDVDEDDEDDDDDDDDDEDDDNEEYEDEDAFDVHASAGEHDNPSIEFDPDVFSSDEAYARALQEAEEREMAARLLALAGINDREAEDVEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIAGLPSLNYKVGSDQHGSNDSCVICRVDFEDGDSLTHLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSNL 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g04012 348 SUPERFAMILY RING/U-box 288 342 - -
Viun7g04012 348 MobiDBLite consensus disorder prediction 134 175 - -
Viun7g04012 348 MobiDBLite consensus disorder prediction 113 195 - -
Viun7g04012 348 Coils Coil 33 53 - -
Viun7g04012 348 MobiDBLite consensus disorder prediction 30 47 - -
Viun7g04012 348 MobiDBLite consensus disorder prediction 176 191 - -
Viun7g04012 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 344 IPR013083 -
Viun7g04012 348 SMART ring_2 297 337 IPR001841 -
Viun7g04012 348 ProSiteProfiles Zinc finger RING-type profile. 297 338 IPR001841 -
Viun7g04012 348 MobiDBLite consensus disorder prediction 71 87 - -
Viun7g04012 348 FunFam E3 ubiquitin ligase BIG BROTHER-related 263 344 - -
Viun7g04012 348 Pfam Ring finger domain 295 337 IPR001841 -
Viun7g04012 348 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 33 346 IPR043312 -
Viun7g04012 348 MobiDBLite consensus disorder prediction 1 87 - -
Viun7g04012 348 MobiDBLite consensus disorder prediction 48 62 - -
Viun7g04012 348 MobiDBLite consensus disorder prediction 8 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g04012 Viun-Chr7 39586960 39593161 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g04012 74 241 C3H Transcription Factor Family AT3G19910 44.920 7.66e-35 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g04012 K19045 - gmx:100306465 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g04012 7 39586960 39593161 Viun7g04012 7 39586960 39593161 ECH