Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g04006 ATGGGCAAAGGGAAAAGGCGTCGAGGTAATAATACAGTCACCATTCCGGAAGATTCAAACCCCACCCAACAAAATACTCAATCTTTAGATTTCAATGGGGAGTGTGAAGCTGATCAGAGTAAAGCAGTAAACTTTACGGAAACAATTGATGATGGGGCTGTAAGGTTTTCTTCTATTGCTGAAGGTGTGAAAGGAAAGGGTGGCAGAAGAAGTGAAAAGGAGGAGGGCGAGAAAACGATGTTAGAGGGGAGTTCGTTGGAGAAGGGCGGCGCTGGAGACGAAAACCGTGGTGAAAATGGTGGAGTTGAAGTTTCTACTTCGGTTCAAGGTGTTAAAAAGAAGCGAGGCAGAAAGAGTAAACAGGAAAAGTATGAGATGGAAATGAAGTTGTTGGGGGAAAATTTATTGGAGAAAAATGGTGAAAATAGCAGGGTAGGATGTTCTTCTGTTCAAGGTGCGGAAAAGAAGCGCGGCAGAAGGATTAAAAAAGAAAATGAAGACATGGACAGTAAGATTTCAGATGGCAGTTTGTTGGAGAAGAATGGTGATGGAGATGTTAGCCACGGTGAAAGGGATGGGGTTGGTGGTTCTTCTTCTCTTCAAGAAGGCGTGAGAGATGGAGGTAATGGTGGGGTTCATGTTAAGAGACCTGGGAGGAAAAGAAAGGTTGTTAAGGAAGGGGATGCTGAGTTTGAAATGTCTGTCGTTCTTTCGGGAAGTGGAAGTGGCAATGGGAAACAACATAATCTTAGAACTCGTAAAGTAAAAATAGAAGCTGTGAAGCCGGAAAAGAGTAAGAGGGATAAGAAGTCTGTTGAACAATCCTTAATGTGCCATCAATGCCAGAGAAATGATAAAGGCAGGGTTGTGAGGTGCTCAAAATGCAAGAGGAAAAGATTTTGCATACCCTGTATTCTAAATTGGTATCCTCATTTGAAAGAGGATTACATTGCAGAGGCATGTCCCGTGTGCCGTGGTAATTGCAACTGCAAAGCATGCTTGCGATCCGATGTACTTATTAAAGAAATGAAGAATAAAACAAGTACCAATGAAAATGAGAAGGTTGAGGTCTCTACGTGTTTGCTGCAAGTACTTCTTCCGTATTTAAGATTGTTGGATGAAGAACAAATGATTGAGAACGAGACAGAAGCTAAGATACAGGGAATCTCAGTCTCAGAGCTTAAAGTAGTGCACGCGGATTATTGTAAGGATGAACGTGTATATTGTGACAACTGCAAAACCTCCATATTTGATTACCATAGAAGCTGTACAGAATGCTCTTTTGATCTTTGTCTCATCTGTTGCCGTGAACTTCGTAGTGGTCAGCTTGTAGGGGGTGCAGATCCAATTATGTTGGAGTTTTCATTCAGAGGTCGTGAGTACTTGCATGGTGGAGAGGAAACAGTAAACCAAACTGAATTAAATGATGCTGCTAAGCCTCTAATTCGTGAATGGTCAAGAGCTGGATGGCATGCAGAAAGTAATGGTAGCATTCCTTGTCCAAAAGCCAGTGATAAATGTTGCCATGGTTTTCTTGAACTGAGAAGTGTATTAGGTCAACATTTTATAACTGATTTATTGTGTAAAGCAAATGGACTGGCACAAACATTCAAGCATGGGACCCCTGACAAAATCTGTTTGTGTTCAAGGCCTGATAGAAACGCAAATTATGATATGAGGAAGGCTGCTTCCCGTGCAGATTCTAGTGACAACTATTTGTACTGTCCTAAGGCTGTACAACTACAGGATGAGGATTTAGGGCATTTTCAGTGGCATTGGGAAAAGGGAGAGCCTGTCATTGTTAGCCATGTGATTGATTGTACATCTGGTTTAAGCTGGGAACCACTTGTCATGTGGCGTGCATTCCGTCAGATGACTAATACCAAACATGAACAACATTTAGATGTAAAGGCAATTGATTGCTTAGATTTCTGCGAGGTAGAAATTAACATCCACCAATTCTTTATTGGGTATACGAAAGCTTTTGGGGATTGGCTTAATTGGCCTCGGATATTGAAGTTAAAAGATTGGCCACCTTCTAATTTATTTGAGGAACGCTTGCCTAGACATTGTGCTGAGTTTATATCGTCCTTACCATTCAAGGAATATACTGATCCTCTTGGTGGCTGTCTTAACTTAGCTGTTAAATTACCTAAGGAGTGTCTAAAGCCAGACATGGGGCCAAAGACATATATTGCTTATGGATTTCCTGAGGAGTTTGGACGTGGTGACTCAGTGACTAAGCTCCACTGTGATATGTCCGATGCAGTAAATGTGTTGACTCATATTGCTGAAGTCAAATTGGAACCCGGGCATCTTAGTGCCATTGAGAAGTTGAAACAAAAGCACTTTGAGCAAGACAAGAGGGAGCTGCATAGTGATCACGATAGAGAAACTAATGTTGACAAAGTAAAAACGATGCCAGAAAGTGATTTGTCGTTTGCAGGGGATGGCTCAGAAGGTGCTCTGTGGGATATTTTTCGGAGGCAGGATGTACCTAAATTGCAGGAGTATCTGTGGAAGCATTTTAGAGAGTTTAGGCATATCCATTGCCGTCCTTTGGAGCAGGTTATTCACCCCATCCATGACCAGACATTCTATTTGACCGTGGAGCATAAGAGGAAGCTTAAGGAAGAGTATGGAATTGAGCCCTGGACATTCGTTCAGAAGCTTGGAGATGCTGTTTTCATTCCAGCTGGCTGTCCTCACCAAGTCAGAAATCTGAAGTCATGTATTAAGGTTGCATTGGATTTTGTTTCTCCTGAAAATGTTGGGGAGTGTTTTCGTTTAACAGAGGAATTTCGTACACTTCCCATAAGCCATGGGTCTGCTGAGGATAAATTGGAGGTGAAAAAGATGACAATATATGCTATGCAAGATGTGATAACAAAATTGGAGAAAGCAAGGATGGAAGTAAATATTCCCTTAACAGACAAAGAGGAAGAGGTGGAAGAATAA 2958 0.4178 MGKGKRRRGNNTVTIPEDSNPTQQNTQSLDFNGECEADQSKAVNFTETIDDGAVRFSSIAEGVKGKGGRRSEKEEGEKTMLEGSSLEKGGAGDENRGENGGVEVSTSVQGVKKKRGRKSKQEKYEMEMKLLGENLLEKNGENSRVGCSSVQGAEKKRGRRIKKENEDMDSKISDGSLLEKNGDGDVSHGERDGVGGSSSLQEGVRDGGNGGVHVKRPGRKRKVVKEGDAEFEMSVVLSGSGSGNGKQHNLRTRKVKIEAVKPEKSKRDKKSVEQSLMCHQCQRNDKGRVVRCSKCKRKRFCIPCILNWYPHLKEDYIAEACPVCRGNCNCKACLRSDVLIKEMKNKTSTNENEKVEVSTCLLQVLLPYLRLLDEEQMIENETEAKIQGISVSELKVVHADYCKDERVYCDNCKTSIFDYHRSCTECSFDLCLICCRELRSGQLVGGADPIMLEFSFRGREYLHGGEETVNQTELNDAAKPLIREWSRAGWHAESNGSIPCPKASDKCCHGFLELRSVLGQHFITDLLCKANGLAQTFKHGTPDKICLCSRPDRNANYDMRKAASRADSSDNYLYCPKAVQLQDEDLGHFQWHWEKGEPVIVSHVIDCTSGLSWEPLVMWRAFRQMTNTKHEQHLDVKAIDCLDFCEVEINIHQFFIGYTKAFGDWLNWPRILKLKDWPPSNLFEERLPRHCAEFISSLPFKEYTDPLGGCLNLAVKLPKECLKPDMGPKTYIAYGFPEEFGRGDSVTKLHCDMSDAVNVLTHIAEVKLEPGHLSAIEKLKQKHFEQDKRELHSDHDRETNVDKVKTMPESDLSFAGDGSEGALWDIFRRQDVPKLQEYLWKHFREFRHIHCRPLEQVIHPIHDQTFYLTVEHKRKLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGECFRLTEEFRTLPISHGSAEDKLEVKKMTIYAMQDVITKLEKARMEVNIPLTDKEEEVEE 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g04006 985 Gene3D Cupin 571 943 - -
Viun7g04006 985 FunFam Transcription factor jumonji domain-containing protein 570 944 - -
Viun7g04006 985 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 273 338 IPR018866 -
Viun7g04006 985 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 67 970 IPR045109 GO:0032454|GO:0033169
Viun7g04006 985 ProSiteProfiles JmjC domain profile. 706 935 IPR003347 -
Viun7g04006 985 SMART cupin_9 687 935 IPR003347 -
Viun7g04006 985 Pfam JmjC domain, hydroxylase 822 918 IPR003347 -
Viun7g04006 985 MobiDBLite consensus disorder prediction 60 225 - -
Viun7g04006 985 ProSiteProfiles Zinc finger RING-type profile. 278 325 IPR001841 -
Viun7g04006 985 MobiDBLite consensus disorder prediction 13 33 - -
Viun7g04006 985 MobiDBLite consensus disorder prediction 120 134 - -
Viun7g04006 985 MobiDBLite consensus disorder prediction 1 33 - -
Viun7g04006 985 SUPERFAMILY Clavaminate synthase-like 588 956 - -
Viun7g04006 985 MobiDBLite consensus disorder prediction 153 190 - -
Viun7g04006 985 MobiDBLite consensus disorder prediction 65 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g04006 Viun-Chr7 39557752 39565456 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun7g04006 JmjC 1.6e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g04006 K15601 - gmx:112997634 1177.16