Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g04002 ATGGCCATGATGGTGACGGAGGGCAACGACAGCTGCGGCAGCGGAGTGCAGCACCATACGACGTCGTCCACCTCCTCGCCGGCGCAAACTCGTCAGCAGCGCCACAAGGTCGAAGTCTACAATGAGATTCTTCGCCGCTTGAAAGATTCCGGCCACGAAGAGGCTATGCAACCTGGCTTCAACGATCAGCTTTGGGCTCACTTCAATCGCCTTCCCACACGGTACGCGCTGGATGTGAATGTGGAAAGGGCGGCTGATGTTCTTATGCACAAGAGATTATTGCAGTTGGCGCATGATCCTGCTAATAGGCCTTCAATTGAAGTTAGATTAGTTCAGGTTCATCCCATATCTGATGGAAACTCAGCAGACGCTTCTGAATTGGATGATCCTGGGATAGAATCTGGTCAAAGTTCTTCAAAGTACTCGAGCAGACAGAGACCCATGCATGAAATCACCATCTCAACAGATGACAAGCCAAAGCTTCTTAGCCAGTTAACTGCTTTGCTTGCTGAGATTGGACTTAACATCCAAGAAGCACACGCCTTTTCCACAACTGATGGTTACTCATTAGATGTATTTGTTGTTGAAGGATGGCCCTATGAGGAAACAGAAAAGCTTAAAGCAGCTTTGGAAAGAGAAGTCTTGAAGAAGATTGAGAGACAGGTGAGGTCCAGTCCGCAATCTGTATCTTCTGTTGATGAGCCTGATCAAGCAAAGATGAAAAGCGAACTGGATCATTTGACAATACCAAATGATGGGACAGATGTTTGGGAAATAAATCCTAAACATTTGAAATATGGAACTCAAATTGCATCTGGGTCATATGGTGAACTATTTAAAGGTGTATACTGTAGCCAGGAAGTAGCGATCAAAGTTCTCAAGCCTGAGCATGTAAACTCAGAACTGCAGAAAGAGTTTGCCCAAGAAGTCTATATCATGAGAAAGGTTCGACACAAGAATGTTGTACAATTCATAGGAGCATGTACCAAGCCCCCACGTTTATGCATAGTGACAGAATTTATGTCAGGTGGAAGTGTGTATGACTACCTACATAAGCAGAAGGGCTTTTTTAAATTTCCTACCCTACTTAAAGTCGCAATTGATATTTCTAAAGGGATGAACTACTTGCACCAACATAACATAATCCATAGAGACCTGAAGGCTGCCAACCTTTTGATGGACGAAAATTGTGTTGTAAAGGTTGCTGATTTTGGTGTTGCTAGAGTTAAAGCTCAGTCTGGCGTTATGACAGCAGAAACTGGAACATATAGATGGATGGCTCCCGAGGTTATAGAACACAAGCCGTATGATCACAAGGCTGATGTATTTAGTTTTGGAATTGTTTTATGGGAGTTGCTCACTGGAAAGCTTCCATACGAATATTTAACCCCCCTACAGGCAGCTATAGGAGTGGTTCAAAAGGGTTTGCGACCCACCATCCCCAAGAACACTCATCCAAAATTTGTTGAACTTCTTGAGAGATCCTGGCAGCAAGATCCAACACTGAGACCCGATTTCTCTGAAATTATCGACATCCTGCAGCAGTTAGCGAAGGAGGTTGGAGATGGAGAAGAGCGGCACAAGGAAAAATCTGGAGGACTTCTGTCAGTTCTGAGAAGAGGACATCACTAA 1632 0.4449 MAMMVTEGNDSCGSGVQHHTTSSTSSPAQTRQQRHKVEVYNEILRRLKDSGHEEAMQPGFNDQLWAHFNRLPTRYALDVNVERAADVLMHKRLLQLAHDPANRPSIEVRLVQVHPISDGNSADASELDDPGIESGQSSSKYSSRQRPMHEITISTDDKPKLLSQLTALLAEIGLNIQEAHAFSTTDGYSLDVFVVEGWPYEETEKLKAALEREVLKKIERQVRSSPQSVSSVDEPDQAKMKSELDHLTIPNDGTDVWEINPKHLKYGTQIASGSYGELFKGVYCSQEVAIKVLKPEHVNSELQKEFAQEVYIMRKVRHKNVVQFIGACTKPPRLCIVTEFMSGGSVYDYLHKQKGFFKFPTLLKVAIDISKGMNYLHQHNIIHRDLKAANLLMDENCVVKVADFGVARVKAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEYLTPLQAAIGVVQKGLRPTIPKNTHPKFVELLERSWQQDPTLRPDFSEIIDILQQLAKEVGDGEERHKEKSGGLLSVLRRGHH 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g04002 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 381 393 IPR008271 GO:0004672|GO:0006468
Viun7g04002 543 PRINTS Tyrosine kinase catalytic domain signature 440 462 IPR001245 GO:0004672|GO:0006468
Viun7g04002 543 PRINTS Tyrosine kinase catalytic domain signature 421 431 IPR001245 GO:0004672|GO:0006468
Viun7g04002 543 PRINTS Tyrosine kinase catalytic domain signature 375 393 IPR001245 GO:0004672|GO:0006468
Viun7g04002 543 PRINTS Tyrosine kinase catalytic domain signature 484 506 IPR001245 GO:0004672|GO:0006468
Viun7g04002 543 PRINTS Tyrosine kinase catalytic domain signature 338 351 IPR001245 GO:0004672|GO:0006468
Viun7g04002 543 SMART serkin_6 264 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g04002 543 CDD STKc_MAP3K-like 270 513 - -
Viun7g04002 543 Pfam Protein tyrosine and serine/threonine kinase 264 512 IPR001245 GO:0004672|GO:0006468
Viun7g04002 543 Gene3D - 147 221 - -
Viun7g04002 543 Gene3D Phosphorylase Kinase; domain 1 254 342 - -
Viun7g04002 543 MobiDBLite consensus disorder prediction 131 147 - -
Viun7g04002 543 MobiDBLite consensus disorder prediction 521 543 - -
Viun7g04002 543 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 62 519 - -
Viun7g04002 543 FunFam Serine/threonine-protein kinase isoform 1 254 342 - -
Viun7g04002 543 MobiDBLite consensus disorder prediction 118 147 - -
Viun7g04002 543 SUPERFAMILY ACT-like 148 212 IPR045865 -
Viun7g04002 543 Coils Coil 200 220 - -
Viun7g04002 543 Gene3D Transferase(Phosphotransferase) domain 1 343 534 - -
Viun7g04002 543 ProSiteProfiles Protein kinase domain profile. 264 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g04002 543 SUPERFAMILY Protein kinase-like (PK-like) 248 513 IPR011009 -
Viun7g04002 543 MobiDBLite consensus disorder prediction 10 34 - -
Viun7g04002 543 MobiDBLite consensus disorder prediction 521 536 - -
Viun7g04002 543 FunFam serine/threonine-protein kinase HT1 343 533 - -
Viun7g04002 543 CDD ACT_TyrKc 148 215 - -
Viun7g04002 543 ProSiteProfiles ACT domain profile. 150 231 IPR002912 -
Viun7g04002 543 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g04002 Viun-Chr7 39527768 39537953 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g04002 7 542 MAP Kinase Kinase Kinase AT4G35780 62.304 0.0 712
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Viun7g04002 PK_Tyr_Ser-Thr 3.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g04002 - - gmx:100805180 1005.36