Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03998 ATGCAATCTATCAGGAAGTCCTTCAAATCTTATGGTTCCTTCAAACAGTCAAAAAGGTTTTCCGGCGCCGGAAACCCCGATTCCGACCACGAGCAGCTACCCATTCTCCTCGAGCAAGAAAGGAACCGCCACAACGCAATGCCGGCCGGCGACTACGTCGTCAAAATCGACGATGCCGCCAATCCATCCCAGGCCAACAAGATTTGGCGCGACTCGAGCTACGACTTCTGGAGGGGCGAAGCCTCCTCCTCCGCCGCCGCCGCCGCCACTGACCAGAGTTTTGATTTCCGGCAGACGGAGGACCCGCCGTCGCAGCTGATTGGGCGGTTCCTCCACAAGCAGCGGGCCTCCGGTGAGATGCAGCTGGACATGGATTTGGAAATGGAGGAGCTCCAGCAGGACGGCGTCGAAGGAAGGTTGACGCCGGTGGAGGAGTCTCCGGTGAACTTTCGCAATTCCAGGGAGCTGAAGGTCTCCTTCGATGAACCCCTTCCCAATACGAATCTCCTCGAACAGCAGAACGACACCTTCAGAAGAAGGCACAGCAAGGAAGCGTCGACGATGGCGGACTTCCAACGCCCTCCGCATCCGCCGCAGCACGATCATCGCCGCTCCCCTTCGCCGTCGCCTGTTGAGGATGGCGAGGTCCTTCGGTGCACCTCGAACGCTTCCTTCGAGAGAAACCTCTCCATGCAGAGAAAATCCGCGTTGTTGAAGGCCAAAACGAGATCCAGGTTGCTGGACCCGCCAGAGGAACCCGAGAGAAAATCGGGTCGGGTCGTGAAATCGGGTCAGCTCCAGTCCGGGATTTTAGGTAAAAAGGGTGATGAGGAAGACGACGATCCGTTTTTGGAAGAGGATTTTCCCGACGAGTTTAAGAAGACTCATTTCAGCCTCTGGATTCTTCTGGAGTGGGTGAGTTTGTTTTTGATCACTGGGTTTCTGATAGCCACCCTCTGCATTCCCTTTCTGAGGGAGAAGCATCTGTGGCAGCTTAAATTGTGGAAATGGGAGGTTATGGTTCTGGTTTTGATCTGTGGGAGATTGGTTTCCGATTGGGTTATTAGGATTGCCGTCTACTGCATCGAGAGGAACTTCCTCTTGAGGAAGAGGGTGTTGTATTTTGTGTACGGTGTGAAGAAAGCGGTTCAGAATTGCGTTTGGTTGGGACTGGTGCTCATTGCATGGCATTTGTTGTTTGACCAGAGGGTGCAGAGGGAGACAAACAGTAATTTCCTGGAGTATGTTAACAAGGTGTTGGTGTGTTTCCTTGTGGGGACTTTGGTGTGGTTGCTCAAGACTCTCATGGTGAAGGTGTTGGCATCTTCTTTCCATGTGAGCACGTACTTTGATAGGATTCAGGAGTCACTGTTCAATCAGTATGTGATTGAGACGCTCTCGGGGCCTCCATTGGTGGAGATTAAGAAGGCCGAGGAAGAGGAAGAGAGGCTCGCCGATGAGGTTCAGAAGCTGCAGAATGCTGGGGTTACCATACCCCCTGATCTTAAGGCAACTGCTTTTTCTAACATGAAGAGTGGGAGGTACAGGAGTGGAGTGCTGGCCAAGAGCCCCAGAGCTAAGAGCGGAAAGTTTTCGCGGCCTCTTTCTAAGGGCGCTGACGATAATGTCATCACCATTGATAACCTCAATAAGCTCAATCCCAACAATATCTCTGCCTGGAATATGAAAAGGTTGATGAACATGGTCCGGCATGGGGCTCTTAGCACCTTGGATGAACAGATACTTGATAGCGCCAATGACGATGAGAACGCCACGCAGATCAGAAGTGAAAACGAGGCAAAAGTTGCTGCTAAGAAAATATTTCATAATGTTGCTAGGCGTGGCTGCAGGTTTATATACCCGGATGACTTAATGCGATTTATGCAAGAAGACGAAGCTGCAAAAACCATGAATCTCTTCGAAGGAGCATCTGATTCTGGGAAAATAAGCAAAGCTGCCTTGAAGAACTGGGTGGTCAATGCCTTCAGGGAAAGGAGAGCGCTCGCTTTGACACTAAATGACACAAAAACGGCAGTGAACAAACTTCATCGAATGCTCAATTTTATAGTTGGAATTGTTGTACTGATTATTTGGCTCTTGATATTGGAACTTGCCACCACCAAATTTCTTGTCTTTTTGAGTTCACAGATTGTCTTGGTTACATTTATATTTGGAAACACCTGCAAGACCATATTTGAGGCAATTATTTTCCTATTTGTCATGCACCCATTTGACGTGGGAGATAGATGTGAAATTGATGGGATTCAGATGATCGTAGAAGAAATGAACATCTTGACAACCATATTTCTGAAATATGATAATCATAAGGTGATCATCCCTAACAGTGTCCTTGCTACCAAGGCTATATTCAACTATTACCGGAGTCCTGACATGCAAGATATTATCGAATTCTACATACATGTATGCACCCCAGTTGAAAAGATTTCACTTATAAAACACAGAATAAGCAGTTTCTGTGACAACAAGAAGGAGCACTGGTATCCTTCACCTACTGTAGTAGTGAGGGATCATTTAGACATACACATGGTGAAAATGGCTATCTGGCCCAATCATAGAATGAACTTCCAAGATCAGACAGAAAGGCATAACAGAAGATCCCTTTTGCTTGAAGAGTTGATCAAGATTTTCAGGGAACTCGACCTTAATTACCGCTTACTGCCCCTGGACGTTAACGTCAGAGCCGTGCCTACCTCCTCTGAACGGCTTCCACCTAGTTGGCAATCGACTCCAAGTTGA 2757 0.4831 MQSIRKSFKSYGSFKQSKRFSGAGNPDSDHEQLPILLEQERNRHNAMPAGDYVVKIDDAANPSQANKIWRDSSYDFWRGEASSSAAAAATDQSFDFRQTEDPPSQLIGRFLHKQRASGEMQLDMDLEMEELQQDGVEGRLTPVEESPVNFRNSRELKVSFDEPLPNTNLLEQQNDTFRRRHSKEASTMADFQRPPHPPQHDHRRSPSPSPVEDGEVLRCTSNASFERNLSMQRKSALLKAKTRSRLLDPPEEPERKSGRVVKSGQLQSGILGKKGDEEDDDPFLEEDFPDEFKKTHFSLWILLEWVSLFLITGFLIATLCIPFLREKHLWQLKLWKWEVMVLVLICGRLVSDWVIRIAVYCIERNFLLRKRVLYFVYGVKKAVQNCVWLGLVLIAWHLLFDQRVQRETNSNFLEYVNKVLVCFLVGTLVWLLKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLVEIKKAEEEEERLADEVQKLQNAGVTIPPDLKATAFSNMKSGRYRSGVLAKSPRAKSGKFSRPLSKGADDNVITIDNLNKLNPNNISAWNMKRLMNMVRHGALSTLDEQILDSANDDENATQIRSENEAKVAAKKIFHNVARRGCRFIYPDDLMRFMQEDEAAKTMNLFEGASDSGKISKAALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFIVGIVVLIIWLLILELATTKFLVFLSSQIVLVTFIFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGIQMIVEEMNILTTIFLKYDNHKVIIPNSVLATKAIFNYYRSPDMQDIIEFYIHVCTPVEKISLIKHRISSFCDNKKEHWYPSPTVVVRDHLDIHMVKMAIWPNHRMNFQDQTERHNRRSLLLEELIKIFRELDLNYRLLPLDVNVRAVPTSSERLPPSWQSTPS 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03998 918 MobiDBLite consensus disorder prediction 244 259 - -
Viun7g03998 918 Pfam Mechanosensitive ion channel 685 842 IPR006685 GO:0016020|GO:0055085
Viun7g03998 918 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 90 913 IPR016688 -
Viun7g03998 918 Coils Coil 474 494 - -
Viun7g03998 918 MobiDBLite consensus disorder prediction 163 215 - -
Viun7g03998 918 MobiDBLite consensus disorder prediction 240 263 - -
Viun7g03998 918 MobiDBLite consensus disorder prediction 1 44 - -
Viun7g03998 918 Gene3D - 743 792 IPR023408 -
Viun7g03998 918 SUPERFAMILY Sm-like ribonucleoproteins 733 792 IPR010920 -
Viun7g03998 918 MobiDBLite consensus disorder prediction 1 23 - -
Viun7g03998 918 MobiDBLite consensus disorder prediction 195 209 - -
Viun7g03998 918 FunFam Predicted mechanosensitive ion channel 743 792 - -
Viun7g03998 918 PIRSF Memb_At2g17000 37 918 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03998 Viun-Chr7 39518276 39522348 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03998 51 918 Mechanosensitive Ion Channel Family AT1G78610 55.947 0.0 919
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03998 K22048 - gmx:102665658 1449.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g03998 7 39518276 39522348 Viun7g03998 7 39518276 39522348 ECH