Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03971 ATGCGACATAAAGAGAAAAAGGAAGAAGCTACACAACCTGATGCTGATCCTGAAAGAGATCAAAGAACTGTGTTCGCCTATCAGATTTCTCTGAAAGCTGATGAAAGAGATGTATACGAGTTCTTCTCAAGGGCTGGCAAGGTACGAGATGTTCGTTTGATTATGGACCGCAATTCAAGGCGTTCTAAGGGTGTTGGGTATATTGAGTTTTATGATGTCATGTCTGTCCCAATGGCAATTGCACTTTCAGGCCAACCTCTCCTTGGTCAACCAGTGATGGTGAAGCCGTCAGAAGCAGAAAAGAATTTGGTTCAGTCCACAACAGCTGTTGGTGGATCCACTGGACTTATAGGTCCTTATTCTGGGGGAGCAAGAAGGCTCTATGTTGGGAATCTGCATATCAGTATGAGTGAAGCTGATATTCGTAAGGTATTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCTCTCGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTACAGTTTGCACGCCTTGAAGATGCCAGAAATGCTCAGAGCTTGAATGGTCAATTAGAGATTGGTGGTAGAACAATCAAGGTATCGGCTGTTACTGATCAAACTGGAATGCAAGAGGTTGGAGGAAATACTGGTGATTTTGATGATGATGATGAAGGAGTTGGCTTGTCCTTGAATGCATGTTCTCGAGCAATACTAATGCAGAAGTTGGATCGTAGTGGCACTGCATCAAGCATGGTTGGTTCCCTGGGTAATTCTGTTGTCAACAACACAGGTCTTAATCTACCAGCAACAGGAAACATACTTGGAGCTGTGCCCGCGGGTTCTCCCCTTTCTTCTATTCCTGCAGTATCTGGGTTGGCAGGTGGAGGTCTCCAAATTCCCATGGCTACAATTCCTACTATTGATACAATCGGTGTTCCAAGTGAATGCTTAATGTTAAAGAACATGTTTGATCCCAAGGACGAGACTGAACCAGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAGTTTGGGACGTTAAGACACATATATGTTGATAAGAAGAGTGCTGGTTTTGTCTACTTACGTTTTGAAGAGACCCATTCTGCAATAAGTGCTCAGCGGTCCTTGCACGGACGATGGTTTGCTGGGAAGATGATCACTGCGAGCTTCATGGTGCCTCAGTCATACGAGGATAAATTCCCAGACAGCAGATAA 1221 0.4414 MRHKEKKEEATQPDADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAVGGSTGLIGPYSGGARRLYVGNLHISMSEADIRKVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQTGMQEVGGNTGDFDDDDEGVGLSLNACSRAILMQKLDRSGTASSMVGSLGNSVVNNTGLNLPATGNILGAVPAGSPLSSIPAVSGLAGGGLQIPMATIPTIDTIGVPSECLMLKNMFDPKDETEPDFDLDIKEDVEAECSKFGTLRHIYVDKKSAGFVYLRFEETHSAISAQRSLHGRWFAGKMITASFMVPQSYEDKFPDSR 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03971 406 SUPERFAMILY RNA-binding domain, RBD 123 214 IPR035979 GO:0003676
Viun7g03971 406 CDD RRM3_RBM39_like 311 393 - -
Viun7g03971 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 202 IPR000504 GO:0003723
Viun7g03971 406 Gene3D - 119 226 IPR012677 -
Viun7g03971 406 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 218 330 IPR029123 -
Viun7g03971 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 196 IPR000504 GO:0003723
Viun7g03971 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 91 IPR000504 GO:0003723
Viun7g03971 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 336 388 IPR000504 GO:0003723
Viun7g03971 406 Gene3D - 1 107 IPR012677 -
Viun7g03971 406 NCBIfam splicing factor, CC1-like family 3 404 IPR006509 GO:0003723|GO:0005634|GO:0006397
Viun7g03971 406 MobiDBLite consensus disorder prediction 1 21 - -
Viun7g03971 406 Gene3D - 307 406 IPR012677 -
Viun7g03971 406 SMART rrm2_1 126 198 IPR003954 GO:0003676
Viun7g03971 406 SMART rrm2_1 313 391 IPR003954 GO:0003676
Viun7g03971 406 SMART rrm1_1 313 391 IPR000504 GO:0003723
Viun7g03971 406 SMART rrm1_1 126 198 IPR000504 GO:0003723
Viun7g03971 406 SMART rrm1_1 23 95 IPR000504 GO:0003723
Viun7g03971 406 CDD RRM1_RBM39_like 23 95 - -
Viun7g03971 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 395 IPR000504 GO:0003723
Viun7g03971 406 FunFam CC1-like, splicing factor 120 229 - -
Viun7g03971 406 FunFam Splicing factor, CC1-like protein 307 406 - -
Viun7g03971 406 SUPERFAMILY RNA-binding domain, RBD 308 392 IPR035979 GO:0003676
Viun7g03971 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 99 IPR000504 GO:0003723
Viun7g03971 406 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 2 405 IPR006509 GO:0003723|GO:0005634|GO:0006397
Viun7g03971 406 FunFam RNA-binding protein 39 isoform X1 15 107 - -
Viun7g03971 406 SUPERFAMILY RNA-binding domain, RBD 14 121 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03971 Viun-Chr7 39344542 39351047 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03971 23 188 Eukaryotic Initiation Factors Gene Family AT4G34110 28.571 1.18e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03971 K13091 - gmx:100789839 722.62