Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03967 ATGCATCCCAACAACTTGGGCTATAATTTTGTCCTTTTATCATATTGTAGGCGACATAAAGAGAAAAAGGAAGAAGCTACACAACCTGATGCTGATCCTGAAAGAGATCAAAGAACTGTGTTCGCCTATCAGATTTCTCTGAAAGCTGATGAAAGAGATGTATACGAGTTCTTCTCAAGGGCTGGCAAGGTACGAGATGTTCGTTTGATTATGGACCGCAATTCAAGGCGTTCTAAGGGTGTTGGGTATATTGAGTTTTATGATGTCATGTCTGTCCCAATGGCAATTGCACTTTCAGGCCAACCTCTCCTTGGTCAACCAGTGATGGTGAAGCCGTCAGAAGCAGAAAAGAATTTGGTTCAGTCCACAACAGCTGTTGGTGGATCCACTGGACTTATAGGTCCTTATTCTGGGGGAGCAAGAAGGCTCTATGTTGGGAATCTGCATATCAGTATGAGTGAAGCTGATATTCGTAAGGTATTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCTCTCGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTACAGTTTGCACGCCTTGAAGATGCCAGAAATGCTCAGAGCTTGAATGGTCAATTAGAGATTGGTGGTAGAACAATCAAGGTATCGGCTGTTACTGATCAAACTGGAATGCAAGAGGTTGGAGGAAATACTGGTGATTTTGATGATGATGATGAAGGAGTTGGCTTGTCCTTGAATGCATGTTCTCGAGCAATACTAATGCAGAAGTTGGATCGTAGTGGCACTGCATCAAGCATGGTTGGTTCCCTGGGTAATTCTGTTGTCAACAACACAGGTCTTAATCTACCAGCAACAGGAAACATACTTGGAGCTGTGCCCGCGGGTTCTCCCCTTTCTTCTATTCCTGCAGTATCTGGGTTGGCAGGTGGAGGTCTCCAAATTCCCATGGCTACAATTCCTACTATTGATACAATCGGTGTTCCAAGTGAATGCTTAATGTTAAAGAACATGTTTGATCCCAAGGACGAGACTGAACCAGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAGTTTGGGACGTTAAGACACATATATGTTGATAAGAAGAGTGCTGGTTTTGTCTACTTACGTTTTGAAGAGACCCATTCTGCAATAAGTGCTCAGCGGTCCTTGCACGGACGATGGTTTGCTGGGAAGATGATCACTGCGAGCTTCATGGTGCCTCAGTCATACGAGGATAAATTCCCAGACAGCAGATAA 1269 0.4381 MHPNNLGYNFVLLSYCRRHKEKKEEATQPDADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAVGGSTGLIGPYSGGARRLYVGNLHISMSEADIRKVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQTGMQEVGGNTGDFDDDDEGVGLSLNACSRAILMQKLDRSGTASSMVGSLGNSVVNNTGLNLPATGNILGAVPAGSPLSSIPAVSGLAGGGLQIPMATIPTIDTIGVPSECLMLKNMFDPKDETEPDFDLDIKEDVEAECSKFGTLRHIYVDKKSAGFVYLRFEETHSAISAQRSLHGRWFAGKMITASFMVPQSYEDKFPDSR 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03967 422 Gene3D - 323 422 IPR012677 -
Viun7g03967 422 CDD RRM3_RBM39_like 327 409 - -
Viun7g03967 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 143 212 IPR000504 GO:0003723
Viun7g03967 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 352 404 IPR000504 GO:0003723
Viun7g03967 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 107 IPR000504 GO:0003723
Viun7g03967 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 141 218 IPR000504 GO:0003723
Viun7g03967 422 SMART rrm1_1 329 407 IPR000504 GO:0003723
Viun7g03967 422 SMART rrm1_1 142 214 IPR000504 GO:0003723
Viun7g03967 422 SMART rrm1_1 39 111 IPR000504 GO:0003723
Viun7g03967 422 SUPERFAMILY RNA-binding domain, RBD 30 135 IPR035979 GO:0003676
Viun7g03967 422 NCBIfam splicing factor, CC1-like family 17 420 IPR006509 GO:0003723|GO:0005634|GO:0006397
Viun7g03967 422 SUPERFAMILY RNA-binding domain, RBD 324 408 IPR035979 GO:0003676
Viun7g03967 422 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 234 346 IPR029123 -
Viun7g03967 422 FunFam RNA-binding protein 39 isoform X1 31 123 - -
Viun7g03967 422 CDD RRM1_RBM39_like 39 111 - -
Viun7g03967 422 SUPERFAMILY RNA-binding domain, RBD 139 230 IPR035979 GO:0003676
Viun7g03967 422 Gene3D - 135 242 IPR012677 -
Viun7g03967 422 FunFam CC1-like, splicing factor 136 245 - -
Viun7g03967 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 328 411 IPR000504 GO:0003723
Viun7g03967 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 115 IPR000504 GO:0003723
Viun7g03967 422 Gene3D - 14 123 IPR012677 -
Viun7g03967 422 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 18 421 IPR006509 GO:0003723|GO:0005634|GO:0006397
Viun7g03967 422 SMART rrm2_1 329 407 IPR003954 GO:0003676
Viun7g03967 422 SMART rrm2_1 142 214 IPR003954 GO:0003676
Viun7g03967 422 FunFam Splicing factor, CC1-like protein 323 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03967 Viun-Chr7 39344542 39353193 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03967 39 204 Eukaryotic Initiation Factors Gene Family AT4G34110 28.571 1.90e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03967 K13091 - gmx:100789839 724.546