Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03963 ATGGATTTTGACGAGTATGAGTATTTAGAGAAAGCAGTTGAAAATGCTGAAGTTAAGAAGGAGAAGCATAGGGCTAATGGTAGTGATAGAAGTGTGAAGTCTGAAGAGAGAGGGCATGGTCGGAGTTCTAAGCATAAGAGTGGTGAGAAGGATGACGAAGACGTTGAACTCCATGCCAGGCATTCAAAATCTGGAGAGGATTCCCGCCATTATGAGAGGAAGAGAGAAAGAAGCTCCTCTCGTCACGGTTTGCAGTACAGAGATGGAGAGAAGGAGAAAGATCAGCACAGAAGCTCTGGGGGCAGTAGGGATAGGAAGAGGGATAGGGACAGAGACCACGAGAATAATGATAGGAAGAGAGGTAGGGAGAGAGAGAGAGATCGCGAGCGCGACCAAGAAAGGGATAGAAGGGACCGAGGAAGTGAGAGTGAGCAGGAACACCGCAGCAGAAGTAGATCCGAAAGGCATCGGAGTGATCTGGATGACAGAGACAGAGAAACAATTCTTGATAAAGACAGAGAAATAAGCCGGGATAAGGATTTCGGAGACAGAGAAAGGGCGAGGGAAACAAGGGAACGGATTAGAGAAAGCAGGCGACATAAAGAGAAAAAGGAAGAAGCTACACAACCTGATGCTGATCCTGAAAGAGATCAAAGAACTGTGTTCGCCTATCAGATTTCTCTGAAAGCTGATGAAAGAGATGTATACGAGTTCTTCTCAAGGGCTGGCAAGGTACGAGATGTTCGTTTGATTATGGACCGCAATTCAAGGCGTTCTAAGGGTGTTGGGTATATTGAGTTTTATGATGTCATGTCTGTCCCAATGGCAATTGCACTTTCAGGCCAACCTCTCCTTGGTCAACCAGTGATGGTGAAGCCGTCAGAAGCAGAAAAGAATTTGGTTCAGTCCACAACAGCTGTTGGTGGATCCACTGGACTTATAGGTCCTTATTCTGGGGGAGCAAGAAGGCTCTATGTTGGGAATCTGCATATCAGTATGAGTGAAGCTGATATTCGTAAGGTATTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCTCTCGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTACAGTTTGCACGCCTTGAAGATGCCAGAAATGCTCAGAGCTTGAATGGTCAATTAGAGATTGGTGGTAGAACAATCAAGGTATCGGCTGTTACTGATCAAACTGGAATGCAAGAGGTTGGAGGAAATACTGGTGATTTTGATGATGATGATGAAGGAGTTGGCTTGTCCTTGAATGCATGTTCTCGAGCAATACTAATGCAGAAGTTGGATCGTAGTGGCACTGCATCAAGCATGGTTGGTTCCCTGGGTAATTCTGTTGTCAACAACACAGGTCTTAATCTACCAGCAACAGGAAACATACTTGGAGCTGTGCCCGCGGGTTCTCCCCTTTCTTCTATTCCTGCAGTATCTGGGTTGGCAGGTGGAGGTCTCCAAATTCCCATGGCTACAATTCCTACTATTGATACAATCGGTGTTCCAAGTGAATGCTTAATGTTAAAGAACATGTTTGATCCCAAGGACGAGACTGAACCAGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAGTTTGGGACGTTAAGACACATATATGTTGATAAGAAGAGTGCTGGTTTTGTCTACTTACGTTTTGAAGAGACCCATTCTGCAATAAGTGCTCAGCGGTCCTTGCACGGACGATGGTTTGCTGGGAAGATGATCACTGCGAGCTTCATGGTGCCTCAGTCATACGAGGATAAATTCCCAGACAGCAGATAA 1812 0.4531 MDFDEYEYLEKAVENAEVKKEKHRANGSDRSVKSEERGHGRSSKHKSGEKDDEDVELHARHSKSGEDSRHYERKRERSSSRHGLQYRDGEKEKDQHRSSGGSRDRKRDRDRDHENNDRKRGRERERDRERDQERDRRDRGSESEQEHRSRSRSERHRSDLDDRDRETILDKDREISRDKDFGDRERARETRERIRESRRHKEKKEEATQPDADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAVGGSTGLIGPYSGGARRLYVGNLHISMSEADIRKVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQTGMQEVGGNTGDFDDDDEGVGLSLNACSRAILMQKLDRSGTASSMVGSLGNSVVNNTGLNLPATGNILGAVPAGSPLSSIPAVSGLAGGGLQIPMATIPTIDTIGVPSECLMLKNMFDPKDETEPDFDLDIKEDVEAECSKFGTLRHIYVDKKSAGFVYLRFEETHSAISAQRSLHGRWFAGKMITASFMVPQSYEDKFPDSR 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03963 603 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 415 527 IPR029123 -
Viun7g03963 603 CDD RRM3_RBM39_like 508 590 - -
Viun7g03963 603 Gene3D - 504 603 IPR012677 -
Viun7g03963 603 MobiDBLite consensus disorder prediction 180 217 - -
Viun7g03963 603 Gene3D - 182 313 IPR012677 -
Viun7g03963 603 FunFam Splicing factor, CC1-like protein 504 603 - -
Viun7g03963 603 FunFam CC1-like, splicing factor 317 426 - -
Viun7g03963 603 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 296 IPR000504 GO:0003723
Viun7g03963 603 Coils Coil 184 207 - -
Viun7g03963 603 SMART rrm2_1 323 395 IPR003954 GO:0003676
Viun7g03963 603 SMART rrm2_1 510 588 IPR003954 GO:0003676
Viun7g03963 603 FunFam RNA-binding protein 39 isoform X1 212 304 - -
Viun7g03963 603 CDD RRM1_RBM39_like 220 292 - -
Viun7g03963 603 SMART rrm1_1 220 292 IPR000504 GO:0003723
Viun7g03963 603 SMART rrm1_1 510 588 IPR000504 GO:0003723
Viun7g03963 603 SMART rrm1_1 323 395 IPR000504 GO:0003723
Viun7g03963 603 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 324 393 IPR000504 GO:0003723
Viun7g03963 603 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 533 585 IPR000504 GO:0003723
Viun7g03963 603 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 288 IPR000504 GO:0003723
Viun7g03963 603 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 509 592 IPR000504 GO:0003723
Viun7g03963 603 SUPERFAMILY RNA-binding domain, RBD 211 318 IPR035979 GO:0003676
Viun7g03963 603 MobiDBLite consensus disorder prediction 14 165 - -
Viun7g03963 603 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 322 399 IPR000504 GO:0003723
Viun7g03963 603 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 602 IPR006509 GO:0003723|GO:0005634|GO:0006397
Viun7g03963 603 NCBIfam splicing factor, CC1-like family 102 601 IPR006509 GO:0003723|GO:0005634|GO:0006397
Viun7g03963 603 Coils Coil 6 26 - -
Viun7g03963 603 SUPERFAMILY RNA-binding domain, RBD 322 595 IPR035979 GO:0003676
Viun7g03963 603 Gene3D - 316 423 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03963 Viun-Chr7 39344530 39354013 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03963 220 385 Eukaryotic Initiation Factors Gene Family AT4G34110 28.571 1.47e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03963 K13091 - gmx:100789839 847.81