Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03956 ATGAACATGATCATGCAAAACTTGGTGGAAAGACTAAGATCCCTTGTGGGTTTGAACGGATGGGACTACTGTATCTACTGGAAATTGAGTGAAGACGAAAGGTTTCTGGAGTGGTTGGGTTGTTGTTGTGGTGGCACTGAAAGCAACCAAAATGGTGGTGAAGAACATCTTTTCCCTGTGTCTTCTGTGGTTTCATGCAGGGATACCACTTATCCTCACCCCAGAACAAAGCCCTGTGATCTTCTTTCCCAACTTTCCACTTCCATATCCATAGATAATTCTGGGATTTATACACAGACCCTATTAACAAACCAACCCAGTTGGGTGAACTATTCCAATAGCTTGGATTCAAGCATTTTGGATGAAACAATGGGGACCCAGGTTTTGATTTCAGCGCCAGGTGGACTAATTGAACTGTTTGTAACCAAACAAGTGCCTGAAGATCATCAAGTAATAGATTTTGTCACAAACCAGTGCATTGAAGCGGTGAACCAGTCGATGAGCTTCAACATTGACGTGAATGCAATGAGCAACATGCAACCAAACCCACTTTTAGGCGATGAAAACGAAGGGAACAACAGCAGGAACACTCATTTTCACCCCTCAGAACATGTCATCACTATGGACCACCGCATCGGCATGTGCAGTTCTCCACTGAACTTCATGCAGCAGTTCAACTACAACCAGCTGAACAGAATGAAGAGCGATGCCTTTTCTGAAGAATACCAAGGTTCCTTCCTTCACGACAAGCAAACCAACCCAGAAGACGAGCACGACGCGTATCAGAAAAGCCTCATGACAACGGATTCACAGTACATCGAGTCTCTGGAGGCAAAAGAGAAGCAAGAGGAGGACAAGGAGTTGCTGAAACATGTTGTTGCTCGATCCGATTCAATGTCGGATTGCAGTGAGCAGAACGAGGAAGAGGAAGATGGAAAGTATAGGAGGAGAAATGGGAAAGGGAATCAGTCCAAGAATCTCATGGCTGAGAGGAAGAGAAGGAAGAAGCTCAATGACAGGTTATACAAGCTTCGTTCTTTGGTTCCACGGATCTCTAAGCTGGACAGAGCCTCTATCCTTGGAGATGCTATTGAATACGTAAAGGATTTGCAGAAGCAAGTGAAGGAGCTGCAAGATGAGCTTGAGGAAAATGCAGACACAGAAAGCAACTGCATCAATGGGAATAATGATAACAACAACAATAATAATAATAATAATAATCAATATGTGGGTGTAGGTGAACTGTGTCCAAACTCTGAACATGCTAAGGGCCAATCTGGGTTGCATGTGGGTACATCAGGGAATGGCTATGTATCAAAACAAAAGGAGGATGCAGCAGTGATTGACAAGCAAACCCAGCAAATGGAGCCGCAAGTGGAAGTGGCACTGATAGATGGGAATGAGTATTTTGTGAAGGTGTTCTGTGAACACAGGCCTGGTGGGTTTGTGAAGTTGATGGAGTCGTTGAACACAATTGGCATGGATGTGGTGCATGCCACGGTAACCAGCCACAAGGGTCTGGTGTCAAATGTTTTTGAAGTGGAGAAAAAGGACAATGAAAGTGTGGAGGCTGAAGATGTAAGAGAGTCGCTGCTGGAGCTGACGCGGAACCGTTATAGAGGATGGAGTCATGAGGTCACAGCAACTTCAGAGAATGGTGTGGGAAGGGATCAACACCAGATACCATCCTATTCCCACCATTTTCATACTTAA 1713 0.4478 MNMIMQNLVERLRSLVGLNGWDYCIYWKLSEDERFLEWLGCCCGGTESNQNGGEEHLFPVSSVVSCRDTTYPHPRTKPCDLLSQLSTSISIDNSGIYTQTLLTNQPSWVNYSNSLDSSILDETMGTQVLISAPGGLIELFVTKQVPEDHQVIDFVTNQCIEAVNQSMSFNIDVNAMSNMQPNPLLGDENEGNNSRNTHFHPSEHVITMDHRIGMCSSPLNFMQQFNYNQLNRMKSDAFSEEYQGSFLHDKQTNPEDEHDAYQKSLMTTDSQYIESLEAKEKQEEDKELLKHVVARSDSMSDCSEQNEEEEDGKYRRRNGKGNQSKNLMAERKRRKKLNDRLYKLRSLVPRISKLDRASILGDAIEYVKDLQKQVKELQDELEENADTESNCINGNNDNNNNNNNNNNQYVGVGELCPNSEHAKGQSGLHVGTSGNGYVSKQKEDAAVIDKQTQQMEPQVEVALIDGNEYFVKVFCEHRPGGFVKLMESLNTIGMDVVHATVTSHKGLVSNVFEVEKKDNESVEAEDVRESLLELTRNRYRGWSHEVTATSENGVGRDQHQIPSYSHHFHT 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03956 570 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 323 383 IPR036638 GO:0046983
Viun7g03956 570 SMART finulus 327 376 IPR011598 GO:0046983
Viun7g03956 570 Pfam Helix-loop-helix DNA-binding domain 326 371 IPR011598 GO:0046983
Viun7g03956 570 Gene3D - 310 386 IPR036638 GO:0046983
Viun7g03956 570 MobiDBLite consensus disorder prediction 387 408 - -
Viun7g03956 570 ProSiteProfiles ACT domain profile. 470 542 IPR002912 -
Viun7g03956 570 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 209 536 - -
Viun7g03956 570 CDD bHLH_AtAMS_like 324 389 - -
Viun7g03956 570 MobiDBLite consensus disorder prediction 293 332 - -
Viun7g03956 570 Coils Coil 360 390 - -
Viun7g03956 570 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 156 IPR025610 -
Viun7g03956 570 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 321 370 IPR011598 GO:0046983
Viun7g03956 570 MobiDBLite consensus disorder prediction 379 408 - -
Viun7g03956 570 CDD ACT_UUR-ACR-like 471 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03956 Viun-Chr7 39299245 39301598 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03956 5 549 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 45.115 2.73e-139 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun7g03956 bHLH-MYC_N 1.4e-18 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03956 - - gmx:100798282 909.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g03956 7 39299245 39301598 Viun7g03956 7 39299245 39301598 ECH