Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03948 ATGTCTTCTGGTGATGACCGTGCCATTCACTTCTTCAAGAAAATTGATGCAGACACACTTCGAAACGGGGATCTGAGAATACCTCGGAGTTTTGTGAGTAAATATTGGGAAGATATATCAAATCCACTGCATCTTCTTCTTCCCAAAGGTGGTGAATGGGAAGTGAAGTGGAAGAAAGTTGGTGCTGACGTTTGGTTAATTGAAAAATGGAAGAAATTTGCAGAATTTTATTCTTTGGATGAAGATAATCTCTTGATGTTCAAATATGTGGGTAATTCTCAGTTTGAGGTGGTGATACTTCACCCAACTGGCTTGGAAATTATGTACCCTTTAAAGGAAGCAACTTTAGATCATGCAGAGAATCTTAATGGTAATGGTAATGGTAATTCTTCACGCCACTTCAAGAAGACGAAATCTTTTTTACCACGTTCTCATTTCTCCAAGAAGGTGAAAACCAACCGTAGAAACCAACGTAATATCTCTGAAGATGTTGCAAATGGAAGTGCTCTATCTCGAAGGATCAAGGATGAGTTAAATGAGCAACATGCAAATGGTTTTCTTGGTACAAAATTCCATAAAAGAGGTAGAAAAAGAAAAGCCTCTGTCTGCATGAAGTCTTCAAACTCAAAGAAAAGGGCTTTTTCAACTAGAAGTGGCTCTGCTATGGAGAGAGCTCAATCTTTCCACTCTGTGAATCCCGTTTTCATTCGTGAAATGCAGCGATCATATGTTGAAAGAAATATTATGGCGATGCCGCGTAGTTTCATAACAGTAGATGAAGAAAATGAGCACCTTGTTACTCTTTGGACTTCTGAAAGCGGACCTTGGTGTGTTTATTTTTCTCGGAATAATAGCAGTAACCAAATAAATCTTACTACTGGGTGGAAGAGTTTTGTAAAAGATAATAACTTGAAACTAAGGGATGTATGTGTTTTTGAGAAAATCAAGAAACCGGGACTTTCATTCAAAGTTATAATTTTTAGAGACACAGAAGAATCAAGTTCTCCTAAGTTTTCAGATCATTCAATTCCTGAATGCAAAGAGAGGGAGTTAGAGAATTCCTTCAGTGTCTGCATCAAACCTACGGATTTACATACTGTGAATCTTCCAAGGATTTTCTTCGAAGATCATGATATTCTTCATTCAAATGAAGTGACCCTGCAAGTTGGGGAGAGAACATGGAAGGTGAAGATAGATTCTCGCTGTAGATTTTCATGTGGTTGGTGTGTTTTTATCAGAGGATGTGAATTGAAGCCTGGAGATATTTGTCGCTTCAAGTTGATCGATAAGAAGAAGATTGTGTTTCAAGTTACCATTGTAACATGCATCGAGTGA 1335 0.3783 MSSGDDRAIHFFKKIDADTLRNGDLRIPRSFVSKYWEDISNPLHLLLPKGGEWEVKWKKVGADVWLIEKWKKFAEFYSLDEDNLLMFKYVGNSQFEVVILHPTGLEIMYPLKEATLDHAENLNGNGNGNSSRHFKKTKSFLPRSHFSKKVKTNRRNQRNISEDVANGSALSRRIKDELNEQHANGFLGTKFHKRGRKRKASVCMKSSNSKKRAFSTRSGSAMERAQSFHSVNPVFIREMQRSYVERNIMAMPRSFITVDEENEHLVTLWTSESGPWCVYFSRNNSSNQINLTTGWKSFVKDNNLKLRDVCVFEKIKKPGLSFKVIIFRDTEESSSPKFSDHSIPECKERELENSFSVCIKPTDLHTVNLPRIFFEDHDILHSNEVTLQVGERTWKVKIDSRCRFSCGWCVFIRGCELKPGDICRFKLIDKKKIVFQVTIVTCIE 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03948 444 SMART B3_2 355 441 IPR003340 GO:0003677
Viun7g03948 444 SMART B3_2 235 330 IPR003340 GO:0003677
Viun7g03948 444 SMART B3_2 11 103 IPR003340 GO:0003677
Viun7g03948 444 ProSiteProfiles B3 DNA-binding domain profile. 234 330 IPR003340 GO:0003677
Viun7g03948 444 ProSiteProfiles B3 DNA-binding domain profile. 352 443 IPR003340 GO:0003677
Viun7g03948 444 SUPERFAMILY DNA-binding pseudobarrel domain 232 328 IPR015300 -
Viun7g03948 444 CDD B3_DNA 233 328 IPR003340 GO:0003677
Viun7g03948 444 CDD B3_DNA 10 100 IPR003340 GO:0003677
Viun7g03948 444 MobiDBLite consensus disorder prediction 206 221 - -
Viun7g03948 444 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Viun7g03948 444 MobiDBLite consensus disorder prediction 197 221 - -
Viun7g03948 444 SUPERFAMILY DNA-binding pseudobarrel domain 6 110 IPR015300 -
Viun7g03948 444 Gene3D - 342 444 IPR015300 -
Viun7g03948 444 Gene3D - 214 332 IPR015300 -
Viun7g03948 444 CDD B3_DNA 354 439 IPR003340 GO:0003677
Viun7g03948 444 Pfam B3 DNA binding domain 235 328 IPR003340 GO:0003677
Viun7g03948 444 Pfam B3 DNA binding domain 12 99 IPR003340 GO:0003677
Viun7g03948 444 Pfam B3 DNA binding domain 365 434 IPR003340 GO:0003677
Viun7g03948 444 PANTHER B3 DOMAIN-CONTAINING 321 436 - -
Viun7g03948 444 Gene3D - 3 104 IPR015300 -
Viun7g03948 444 SUPERFAMILY DNA-binding pseudobarrel domain 354 442 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03948 Viun-Chr7 39268076 39270048 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03948 11 335 B3 DNA Binding Superfamily AT3G18990 26.146 8.50e-22 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun7g03948 B3 1.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03948 - - vun:114191442 647.506