Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03947 ATGTCTTCTGGTGATGACAGTGTCATTCACTTCTTCAAGAAAATTGACGAAGACACACTTCGAAACGGTGATCTGAGAATACCTCGTAGCTTTGTGAGTAAATATTGGGAAGATATATCAAATCCACTGCATCTTCTTCTTCCCAAAAGTGGTGAATGGGAAGTGAAGTGGAGAAAAGTTGGTGCTGACATTTGGTTAATTGATAACTGGAAGAAATTTGCAGAATTTTACTCTTTGGATGAAGATAATCTCTTGATGTTCAAATATGTGGGTATGTCTCGGTTTGAGGTGGTGATATTTCACCCAACTGGCTTGGAAATTATGTACCCTTTAAAGGAAGCAACTTTAGATCATGCAGAGAATCGTAATGGTAATGGTAATGGTAATTCTTCACGCCACTTCAAGACGGCAAAATCTTCTTTACCACGTTCTTGTTTTTCCAAGAAGGTGAAACCCAACCTTAGGAACCAACCTAATATCTCTGAACATGTTGCAAATAGAAGTGCTCGATCTCGAAGCATCAAAGAGGAGTTAGATGAACAACATGGAAATGGTTTTCATAGTACAAAATTCCAAAAAAGAGGTACAAAAAGAAAAACCTCTTTCTGCACGAAGTCTTCAAACTCTAAGAAAAGGGGTTTTTCAACTAGAAGTGGCTCTGCTATGGAGAGAGCTGAATGTTTCCACTCTGTGAATCCCTTCTTCATTCGTGAAATGCAGCGATCATATATTAAAAGAAATATTATGTTGATACCGAATGGTTTCATAACAGAAGATGAAGATGTGCATGACTGTGTCACTCTTTGGACCGGAAACAAAGGCTGGGGTGTTGATTTTTATCGGAATAAATGCAACAACCAAATAAATCTTACTTCTGGATGGCTGGATTTTGTAAAGGATAATAACTTGGGACTAGGGGATGTATGTGTTTTTGAGAAAATTAAGAAACCGGGAATTTCATTCCAAGTTTCAATTTTTAGAGACAGAGAAGAATCAAGTCCTCCAAAGTTTTCAGATGATACAATTCCTAAACGCAACGAGAGGAACGAGAGGGTGTTGTTGAATCAGTTCAGTGTGTGCATGGAACCTAAGGATTGGAAGTATTTGAGTGTTGGAAGGAGTTTCTTCGAAAATCATGGTATTAGTAATTATTCAGCGGAAGAAGAAAAAGAAGTGACAGTGACCCTGGAAGTTGGGAAGATATCATGGAAAGTGAAGCTAGATTCTCATTGGAGATTGACGAAGGGTTGGTGTGATTTTATTAGAGGATGCAAATTGGAGGTTGGAGATCTTTGTCGATTTGAGTTGATTGATGAGAAGAATATTGTGTTTAAAGTTACCATTGAAACATGCATCGACTGA 1362 0.3796 MSSGDDSVIHFFKKIDEDTLRNGDLRIPRSFVSKYWEDISNPLHLLLPKSGEWEVKWRKVGADIWLIDNWKKFAEFYSLDEDNLLMFKYVGMSRFEVVIFHPTGLEIMYPLKEATLDHAENRNGNGNGNSSRHFKTAKSSLPRSCFSKKVKPNLRNQPNISEHVANRSARSRSIKEELDEQHGNGFHSTKFQKRGTKRKTSFCTKSSNSKKRGFSTRSGSAMERAECFHSVNPFFIREMQRSYIKRNIMLIPNGFITEDEDVHDCVTLWTGNKGWGVDFYRNKCNNQINLTSGWLDFVKDNNLGLGDVCVFEKIKKPGISFQVSIFRDREESSPPKFSDDTIPKRNERNERVLLNQFSVCMEPKDWKYLSVGRSFFENHGISNYSAEEEKEVTVTLEVGKISWKVKLDSHWRLTKGWCDFIRGCKLEVGDLCRFELIDEKNIVFKVTIETCID 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03947 453 Gene3D - 342 451 IPR015300 -
Viun7g03947 453 Gene3D - 215 331 IPR015300 -
Viun7g03947 453 Pfam B3 DNA binding domain 369 444 IPR003340 GO:0003677
Viun7g03947 453 Pfam B3 DNA binding domain 12 99 IPR003340 GO:0003677
Viun7g03947 453 Pfam B3 DNA binding domain 234 327 IPR003340 GO:0003677
Viun7g03947 453 MobiDBLite consensus disorder prediction 119 217 - -
Viun7g03947 453 CDD B3_DNA 10 100 IPR003340 GO:0003677
Viun7g03947 453 ProSiteProfiles B3 DNA-binding domain profile. 234 329 IPR003340 GO:0003677
Viun7g03947 453 SUPERFAMILY DNA-binding pseudobarrel domain 6 110 IPR015300 -
Viun7g03947 453 MobiDBLite consensus disorder prediction 150 167 - -
Viun7g03947 453 PANTHER B3 DOMAIN-CONTAINING 243 444 - -
Viun7g03947 453 MobiDBLite consensus disorder prediction 120 143 - -
Viun7g03947 453 SUPERFAMILY DNA-binding pseudobarrel domain 357 448 IPR015300 -
Viun7g03947 453 CDD B3_DNA 369 448 IPR003340 GO:0003677
Viun7g03947 453 ProSiteProfiles B3 DNA-binding domain profile. 354 452 IPR003340 GO:0003677
Viun7g03947 453 MobiDBLite consensus disorder prediction 168 187 - -
Viun7g03947 453 Gene3D - 3 104 IPR015300 -
Viun7g03947 453 CDD B3_DNA 233 327 IPR003340 GO:0003677
Viun7g03947 453 SMART B3_2 11 103 IPR003340 GO:0003677
Viun7g03947 453 SMART B3_2 235 329 IPR003340 GO:0003677
Viun7g03947 453 SMART B3_2 357 447 IPR003340 GO:0003677
Viun7g03947 453 SUPERFAMILY DNA-binding pseudobarrel domain 230 327 IPR015300 -
Viun7g03947 453 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Viun7g03947 453 MobiDBLite consensus disorder prediction 201 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03947 Viun-Chr7 39265136 39267274 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03947 11 327 B3 DNA Binding Superfamily AT3G18990 26.836 7.09e-28 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun7g03947 B3 1.3e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03947 - - vun:114191442 931.013