Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03946 ATGCAAGTAATAGGGATTGATGACAATTATTACACACTAACCAGCATTTCTATTTTGCAGAAAATACCCAACAAATTCACTACCAAGTACGGAGGTGGCTTGCCAAATCCCTTGTTTATGAAGCTTCCAGATGGATCTGAATGGGAAGTGAATAGGGCAAAAGACAACGGTGAGATTTGGCTGGAAAAAGGTTGGAAAGAATTTGCGGAACACTTCTCCCTAGACCAAGGATGTTTTGTTTGCTTCAGATATGATGGTACTTCTAAGGTTCATGTAAGAATAATGGACCAAAGTGGAGTAGAAATAGAGTACCCCTGTGTCACTGGTCATGAAAATGACAACCATGTTCAAACTAAGGAGCAGCACAACCTGACTTTGGATGAAGGGCCACATCAGAAGGCTGAACAAATATGGGGTGAGAAGTATCTTCAAAGAACTTCATCTTTGAACCGTCCTATGCAAGGTAGAGCACAAGAAGTAGCACGCAATTTCGTCTCATACAATCCCTTTTTCACTGTTCTCATAAAACCTTCTCACGCGGTAGACTATCGGCTGTGCATACCAGATTTGAAAGGCCTGATTGAGAAGAAGGTGAAGTGTGCGGTGCTGCTGCTTGGGGAAAAAAGTTGGACAGTAAATTTGTTAGTTACTAACAAATGTTTTAATCATCATAGTTTTGGTGCTGGCTTTCACTTGTTTATGACTGAGTCTGGATTGCAATCGGGAGATGTTTGCATATTTGAATTGATTAGCAATAATTGTGTTTTCAAAGTTCATATTTTCAAAAGGGACCACCAATTTTTTTCTGGATGA 813 0.3998 MQVIGIDDNYYTLTSISILQKIPNKFTTKYGGGLPNPLFMKLPDGSEWEVNRAKDNGEIWLEKGWKEFAEHFSLDQGCFVCFRYDGTSKVHVRIMDQSGVEIEYPCVTGHENDNHVQTKEQHNLTLDEGPHQKAEQIWGEKYLQRTSSLNRPMQGRAQEVARNFVSYNPFFTVLIKPSHAVDYRLCIPDLKGLIEKKVKCAVLLLGEKSWTVNLLVTNKCFNHHSFGAGFHLFMTESGLQSGDVCIFELISNNCVFKVHIFKRDHQFFSG 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03946 270 SUPERFAMILY DNA-binding pseudobarrel domain 167 264 IPR015300 -
Viun7g03946 270 SMART B3_2 170 264 IPR003340 GO:0003677
Viun7g03946 270 SMART B3_2 10 98 IPR003340 GO:0003677
Viun7g03946 270 PANTHER B3 DOMAIN-CONTAINING 21 259 - -
Viun7g03946 270 ProSiteProfiles B3 DNA-binding domain profile. 22 98 IPR003340 GO:0003677
Viun7g03946 270 CDD B3_DNA 170 262 IPR003340 GO:0003677
Viun7g03946 270 ProSiteProfiles B3 DNA-binding domain profile. 170 264 IPR003340 GO:0003677
Viun7g03946 270 Pfam B3 DNA binding domain 21 97 IPR003340 GO:0003677
Viun7g03946 270 Pfam B3 DNA binding domain 173 263 IPR003340 GO:0003677
Viun7g03946 270 Gene3D - 8 99 IPR015300 -
Viun7g03946 270 SUPERFAMILY DNA-binding pseudobarrel domain 21 105 IPR015300 -
Viun7g03946 270 CDD B3_DNA 22 94 IPR003340 GO:0003677
Viun7g03946 270 Gene3D - 151 265 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03946 Viun-Chr7 39262354 39263617 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03946 16 125 B3 DNA Binding Superfamily AT1G49475 34.545 1.59e-15 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun7g03946 B3 3.5e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03946 - - var:108325495 329.717