Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03945 ATGACTTGTGACCATGACAGTCACGTCCACTTCTTCAAGAGAATCCAAGAATACACCCTTAGAAATGGGGAACTGAGGATACCTCGGAGCTTTGTGAATAAATATTGGGAAGAAATATCAAATCCAATGTTCCTTTTGCTTCCGAACCGCACCAAATGGGAAGTGAATTGGAAAAAGATTGATGCTGACGTTTGGTTAATCGATAAATGGAAGAAATTTGCGGAGTCGTTTTGTTTGGACGAGGAGCATGTTCTGGTGTTCAGATATGTGGGAAAATCAGAGTTTAAGGTTGTAATACTTGATCAAGGTGGGTTGGAGATAGTGTATCCTTCGATGGAAGGACCTTTGGAGGGTGCAGATAATGGTAATCGTTTTGCTCGGCGTAAGAGAGCAAAATTTCATTCACCATCTTCTCCTTCTAAGAAGGTGAAAACCAACCCGAGAAAGGAACCTCATAGTTATCCAACACAAGATGTTGGGTTAAAGAAATTTTCAGGTGACAATGTTGATAAAACAGGTAGAAGAAGTAAAATGAGATGTTCAAGATCTAAGGCTAATACTATTAGAAAAAAGGAGTTGTCAGAAGATACTGAAAGTGGCACTGCTTTGGAGAGAGCTAACTCTTTCCATTCTGAGAATCCCTACTTCATTCGTGAAATGCATAGATCATACATTTGTAGTAATTTCTTGAATATGCCGGTCAATTTCATAACAGAGGAGCCTCGAAAGGGAAATAACAGAGTTAGTCTTTCGATTTCTGAAGAACAAAGTTGGGATATGAACTTCTGTCTGAGTAAGGACCTTAGACGAGTGAAGCTTGTTTCTGGTTGGGCCAATTTTGTAAAGGACAATAACTTGAAAACAGGGAATGTGTGTGTTTTTGAGAGAATTAAGAAGCCAGAAATCATCTCATTTAGGGTTATTATTTTCCGTGATACACAAGAATCTGGTCCTTCCAACTTTCCGGCAAATGGTAGCAAACAAACACGACTTCAAAACACTTCTGCTGATGGAGGCAGTGATGGAACTCCAAAGAAGCACCCAAGTAATAACAATGTCTTTTATGATTCTAAATTCCGTAGATGCGACAATGAAATATCAGGGAATCATTTTTCCCTCTTTGTGAAACCGAATGATGTGTGCATACCAGAGCAATTCATCAGAAATCATAACATGGGTGATGCAGCTAAGGTGATGCTGAAAGTTGGGAAGAGAACATTTGCTGTGAGGCTAGAACATGATCCAAGACAAAAATACCATAAATTATGTTTTGGTTGGTCTTACTTTATGGGTCAATGCAAGTTGAATGAAGGTGATGTCTGTAATTTTGAGCTGGTTGATGAGGACAGGTTTATTTTCCAAGTTAGAGTTGCAACATGCGTAGATTGA 1389 0.3902 MTCDHDSHVHFFKRIQEYTLRNGELRIPRSFVNKYWEEISNPMFLLLPNRTKWEVNWKKIDADVWLIDKWKKFAESFCLDEEHVLVFRYVGKSEFKVVILDQGGLEIVYPSMEGPLEGADNGNRFARRKRAKFHSPSSPSKKVKTNPRKEPHSYPTQDVGLKKFSGDNVDKTGRRSKMRCSRSKANTIRKKELSEDTESGTALERANSFHSENPYFIREMHRSYICSNFLNMPVNFITEEPRKGNNRVSLSISEEQSWDMNFCLSKDLRRVKLVSGWANFVKDNNLKTGNVCVFERIKKPEIISFRVIIFRDTQESGPSNFPANGSKQTRLQNTSADGGSDGTPKKHPSNNNVFYDSKFRRCDNEISGNHFSLFVKPNDVCIPEQFIRNHNMGDAAKVMLKVGKRTFAVRLEHDPRQKYHKLCFGWSYFMGQCKLNEGDVCNFELVDEDRFIFQVRVATCVD 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03945 462 Gene3D - 3 104 IPR015300 -
Viun7g03945 462 SMART B3_2 11 103 IPR003340 GO:0003677
Viun7g03945 462 SMART B3_2 216 313 IPR003340 GO:0003677
Viun7g03945 462 SMART B3_2 374 459 IPR003340 GO:0003677
Viun7g03945 462 SUPERFAMILY DNA-binding pseudobarrel domain 5 102 IPR015300 -
Viun7g03945 462 SUPERFAMILY DNA-binding pseudobarrel domain 209 311 IPR015300 -
Viun7g03945 462 CDD B3_DNA 214 311 IPR003340 GO:0003677
Viun7g03945 462 MobiDBLite consensus disorder prediction 185 199 - -
Viun7g03945 462 MobiDBLite consensus disorder prediction 316 352 - -
Viun7g03945 462 Pfam B3 DNA binding domain 378 456 IPR003340 GO:0003677
Viun7g03945 462 Pfam B3 DNA binding domain 220 311 IPR003340 GO:0003677
Viun7g03945 462 Pfam B3 DNA binding domain 11 100 IPR003340 GO:0003677
Viun7g03945 462 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Viun7g03945 462 CDD B3_DNA 10 101 IPR003340 GO:0003677
Viun7g03945 462 MobiDBLite consensus disorder prediction 129 200 - -
Viun7g03945 462 PANTHER B3 DOMAIN-CONTAINING 232 453 - -
Viun7g03945 462 SUPERFAMILY DNA-binding pseudobarrel domain 371 461 IPR015300 -
Viun7g03945 462 ProSiteProfiles B3 DNA-binding domain profile. 215 313 IPR003340 GO:0003677
Viun7g03945 462 Gene3D - 195 314 IPR015300 -
Viun7g03945 462 Gene3D - 349 461 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03945 Viun-Chr7 39258011 39260317 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03945 11 317 B3 DNA Binding Superfamily AT3G18990 27.874 2.64e-26 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun7g03945 B3 5.7e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03945 - - vun:114191440 964.911