Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03944 ATGGGGCGCAAAAGGAACAGGCCACAAGCGAATACAGTCACCACTCAGCAAAATACTCAATCTTTGGGTTTTAATGCTAAGAAGGAAAACATGGGCAGGAAGATGTCAGAGGGAAGTTTGTTAAAGAAGGGTTGTCAAGATGTTAGCCACATTGTAAGGGATGAGTTAGGTGGTTCTTCTTCTGTCAAGAAGAATAGGAAGTACATTGAAATATCCTGCATGTGCCATCAATGTCAAAGAAATGATAAAGGCAGAGTTGTGAGGTGCACAAAATGTAGGAGGAAAAGATATTGCTTACCCTGTATACGAAATTGGTATCCTCATTTGAAAGAGGAGGACATTGCTGAAGCATGTCCCATGTGCCGTGGTAATTGCAACTGCAAAGCATGCTTGAGGTCCGATGTACTTATCAAAGAAATGAAGATAAAAACAAAAACCAACGAAGATGAGAAGGTCGAATTCTCTATGTATTTGCTGCATGTACTTCTTCCGTATTTAAGATTGATGGATGAAGAACAAATGATTGAGAATGAGACAGAAGCTAAGATACAGGGGATCTCAGTCTCTGAGCTTAGAGTAGTACAGACAATTTATTTTATGGATGAGCGTCAATATTGTGACAACTGTAAAACGTCAATATTTGATTACCACAGAAGCTGCACAAAATGCTCTTTTGAACTATGTCTCATCTGTTGCCGTGAGCTTCGTAGTGGGCAGCTTGTAGGTGGTGCAGATCCAATTATGTTGGAGTTTTCTAGTAAAGGTCGTGGTTACTTGCATGGTGAAAAGGTAGATGGAAGCGTAAACCAAACCGAATCAAATGATGTTGCTAAGCCTGTGGTTCGCAAATGGTCAAGATCTGGATGGCATGCAGAAAGTAATGGTAGAATTCCTTGTCCAAAAGTCGGTGATGAATGTAACCATGGATTTCTTGAACTGAGAAGCGTATTAGGTCAACATTTTATTACTGATTTATTGTGTAAAGCAAATGCACTAGCACAAACATTCGAGCTTGGGACCCCTGACAACTTCTGTATGTGTTCAAGGCTTGATAGAAACACAGATGTTAGATATCATGATACGAGGAAGGCTGCTTCTCGTTCAGATTCCGGTGACAACTATTTGTACTGTCCTAGGGCTGCACAACCACAGGACGAGGATTTATGGCATTTTCAGTGGCATTGGGAAAAGGGGGAGCCTGTCATTGTTAGCCATGTGGTTGATTGTGCATCTGGCTTAAGCTGGGAACCACTTGTCATGTGGCGGGCATTCCGTCAGTTGTCTAATACCAGGCGTGAACAACATTTGAATGTGAAGGCAATTGATTGCTTAGATTTGTGTGAGGTTGAAATTAACATCCACCAATTCTTTACTGGGTATACAAAAGCTCGTGGGGATTGGCTTGATTGGCCTAAGATATTGAAGTTAAAAGACTGGCCATCTTCTTGTTTATTTGAGGAACGATTACCTCGACATTGTGCTGAGTTCATATGCTCCTTGCCATTCAAAGAATATACCAATCCTCTTGGTGGTTTTCTTAACCTAGCTGTAAAATTACCTCTAAAGTGTCTGAGGCCAGACTTGGGGCCAAAGACATACATTGCTTATGGATTTCCTCAGGAGCTTGGACGAGGTGACTCTGTGACTAAGCTCCACTATGATATATGCGATGCAGTATATGTGTTGGCTCATATAGCTGAAGTTCAATGGGAACCGAAGCATCTTACTGCCATTGAGAAGCTGAAACAAAAGCACTTTGAGCAAGACAAAAGGGAGCTACTGAGTGATGATCAGGATGGAGAAACTAATGTTGACACGCATTATAATATATCTTCTGCCCTAAATTCCTTGGAGAAGCAAAATAGTGTCCAAGTCTTGGAAAACAAAAGTGGATGTTGTGATGAGAAAGAAGCTGATCAGTTTCATCAACCCTCTGCTGGTAGTGAGGATGGTCTTTCGTGCGGATCAGAGCTCAACGAGGTTGACAGAGCAAATATGAAGGGAGAAAGTGATCTGTCTTTTGCAGGGGATGGTTCAGAAGGTGCACTGTGGGATATTTTTCGGAGGCAGGACGTGCCTAAATTGGAGGAATATCTCAGAAAGCATTTCAGAGAGTTTAGGCATATCAATTGCCGTCCTTTAAAGCAGGTTATTCACCCCATCCATGACCAGACCTTCTATTTGACTGTGGAGCATAAGAGGAAGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACATTCATTCAGAAGCTAGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCTTACCAACTCAGAAATCTGAAGTCATGTATTCAGGTTGCTCTGGATTTTGTTTCTCCTGAAAATGTTGGTGAGTGCTTTCGTTTGTCGGATGAAATTCGTACACTTCCCGTAAACCATGTGTCTGCTGAGGACAAATTGGAGGTGAAAAAGATGACACTATATGCCATGCAAGATGTCATAACAACATTGGAGAAGGCAAAGGTCTGA 2493 0.4196 MGRKRNRPQANTVTTQQNTQSLGFNAKKENMGRKMSEGSLLKKGCQDVSHIVRDELGGSSSVKKNRKYIEISCMCHQCQRNDKGRVVRCTKCRRKRYCLPCIRNWYPHLKEEDIAEACPMCRGNCNCKACLRSDVLIKEMKIKTKTNEDEKVEFSMYLLHVLLPYLRLMDEEQMIENETEAKIQGISVSELRVVQTIYFMDERQYCDNCKTSIFDYHRSCTKCSFELCLICCRELRSGQLVGGADPIMLEFSSKGRGYLHGEKVDGSVNQTESNDVAKPVVRKWSRSGWHAESNGRIPCPKVGDECNHGFLELRSVLGQHFITDLLCKANALAQTFELGTPDNFCMCSRLDRNTDVRYHDTRKAASRSDSGDNYLYCPRAAQPQDEDLWHFQWHWEKGEPVIVSHVVDCASGLSWEPLVMWRAFRQLSNTRREQHLNVKAIDCLDLCEVEINIHQFFTGYTKARGDWLDWPKILKLKDWPSSCLFEERLPRHCAEFICSLPFKEYTNPLGGFLNLAVKLPLKCLRPDLGPKTYIAYGFPQELGRGDSVTKLHYDICDAVYVLAHIAEVQWEPKHLTAIEKLKQKHFEQDKRELLSDDQDGETNVDTHYNISSALNSLEKQNSVQVLENKSGCCDEKEADQFHQPSAGSEDGLSCGSELNEVDRANMKGESDLSFAGDGSEGALWDIFRRQDVPKLEEYLRKHFREFRHINCRPLKQVIHPIHDQTFYLTVEHKRKLKEEYGIEPWTFIQKLGDAVFIPAGCPYQLRNLKSCIQVALDFVSPENVGECFRLSDEIRTLPVNHVSAEDKLEVKKMTLYAMQDVITTLEKAKV 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03944 830 SMART cupin_9 489 795 IPR003347 -
Viun7g03944 830 ProSiteProfiles JmjC domain profile. 508 795 IPR003347 -
Viun7g03944 830 SUPERFAMILY Clavaminate synthase-like 388 820 - -
Viun7g03944 830 ProSiteProfiles Zinc finger RING-type profile. 75 122 IPR001841 -
Viun7g03944 830 CDD cupin_RmlC-like 719 779 - -
Viun7g03944 830 Pfam JmjC domain, hydroxylase 682 778 IPR003347 -
Viun7g03944 830 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 26 828 IPR045109 GO:0032454|GO:0033169
Viun7g03944 830 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 72 137 IPR018866 -
Viun7g03944 830 Gene3D Cupin 374 804 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03944 Viun-Chr7 39246768 39253357 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun7g03944 JmjC 3.5e-12 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03944 K15601 - gmx:100805723 1223.38