Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03943 ATGGGGCGCAAAAGGAACAGGCCACAAGCGAATACAGTCACCACTCAGCAAAATACTCAATCTTTGGGTTTTAATGCTAAGAAGGAAAACATGGGCAGGAAGATGTCAGAGGGAAGTTTGTTAAAGAAGGGTTGTCAAGATGTTAGCCACATTGTAAGGGATGAGTTAGGTGGTTCTTCTTCTGTCAAGAAGAATAGGAAGTACATTGAAATATCCTGCATGTGCCATCAATGTCAAAGAAATGATAAAGGCAGAGTTGTGAGGTGCACAAAATGTAGGAGGAAAAGATATTGCTTACCCTGTATACGAAATTGGTATCCTCATTTGAAAGAGGAGGACATTGCTGAAGCATGTCCCATGTGCCGTGGTAATTGCAACTGCAAAGCATGCTTGAGGTCCGATGTACTTATCAAAGAAATGAAGATAAAAACAAAAACCAACGAAGATGAGAAGGTCGAATTCTCTATGTATTTGCTGCATGTACTTCTTCCGTATTTAAGATTGATGGATGAAGAACAAATGATTGAGAATGAGACAGAAGCTAAGATACAGGGGATCTCAGTCTCTGAGCTTAGAGTAGTACAGACAATTTATTTTATGGATGAGCGTCAATATTGTGACAACTGTAAAACGTCAATATTTGATTACCACAGAAGCTGCACAAAATGCTCTTTTGAACTATGTCTCATCTGTTGCCGTGAGCTTCGTAGTGGGCAGCTTGTAGGTGGTGCAGATCCAATTATGTTGGAGTTTTCTAGTAAAGGTCGTGGTTACTTGCATGGTGAAAAGGTAGATGGAAGCGTAAACCAAACCGAATCAAATGATGTTGCTAAGCCTGTGGTTCGCAAATGGTCAAGATCTGGATGGCATGCAGAAAGTAATGGTAGAATTCCTTGTCCAAAAGTCGGTGATGAATGTAACCATGGATTTCTTGAACTGAGAAGCGTATTAGGTCAACATTTTATTACTGATTTATTGTGTAAAGCAAATGCACTAGCACAAACATTCGAGCTTGGGACCCCTGACAACTTCTGTATGTGTTCAAGGCTTGATAGAAACACAGATGTTAGATATCATGATACGAGGAAGGCTGCTTCTCGTTCAGATTCCGGTGACAACTATTTGTACTGTCCTAGGGCTGCACAACCACAGGACGAGGATTTATGGCATTTTCAGTGGCATTGGGAAAAGGGGGAGCCTGTCATTGTTAGCCATGTGGTTGATTGTGCATCTGGCTTAAGCTGGGAACCACTTGTCATGTGGCGGGCATTCCGTCAGTTGTCTAATACCAGGCGTGAACAACATTTGAATGTGAAGGCAATTGATTGCTTAGATTTGTGTGAGGTTGAAATTAACATCCACCAATTCTTTACTGGGTATACAAAAGCTCGTGGGGATTGGCTTGATTGGCCTAAGATATTGAAGTTAAAAGACTGGCCATCTTCTTGTTTATTTGAGGAACGATTACCTCGACATTGTGCTGAGTTCATATGCTCCTTGCCATTCAAAGAATATACCAATCCTCTTGGTGGTTTTCTTAACCTAGCTGTAAAATTACCTCTAAAGTGTCTGAGGCCAGACTTGGGGCCAAAGACATACATTGCTTATGGATTTCCTCAGGAGCTTGGACGAGGTGACTCTGTGACTAAGCTCCACTATGATATATGCGATGCAGTATATGTGTTGGCTCATATAGCTGAAGTTCAATGGGAACCGAAGCATCTTACTGCCATTGAGAAGCTGAAACAAAAGCACTTTGAGCAAGACAAAAGGGAGCTACTGAGTGATGATCAGGATGGAGAAACTAATGTTGACACGCATTATAATATATCTTCTGCCCTAAATTCCTTGGAGAAGCAAAATAGTGTCCAAGTCTTGGAAAACAAAAGTGGATGTTGTGATGAGAAAGAAGCTGATCAGTTTCATCAACCCTCTGCTGGTAGTGAGGATGGTCTTTCGTGCGGATCAGAGCTCAACGAGGTTGACAGAGCAAATATGAAGGGAGAAAGTGATCTGTCTTTTGCAGGGGATGGTTCAGAAGGTGCACTGTGGGATATTTTTCGGAGGCAGGACGTGCCTAAATTGGAGGAATATCTCAGAAAGCATTTCAGAGAGTTTAGGCATATCAATTGCCGTCCTTTAAAGCAGGTTATTCACCCCATCCATGACCAGACCTTCTATTTGACTGTGGAGCATAAGAGGAAGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACATTCATTCAGAAGCTAGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCTTACCAACTCAGAAATCTGAAGGTTGCTCTGGATTTTGTTTCTCCTGAAAATGTTGGTGAGTGCTTTCGTTTGTCGGATGAAATTCGTACACTTCCCGTAAACCATGTGTCTGCTGAGGACAAATTGGAGGTGAAAAAGATGACACTATATGCCATGCAAGATGTCATAACAACATTGGAGAAGGCAAAGGTCTGA 2481 0.42 MGRKRNRPQANTVTTQQNTQSLGFNAKKENMGRKMSEGSLLKKGCQDVSHIVRDELGGSSSVKKNRKYIEISCMCHQCQRNDKGRVVRCTKCRRKRYCLPCIRNWYPHLKEEDIAEACPMCRGNCNCKACLRSDVLIKEMKIKTKTNEDEKVEFSMYLLHVLLPYLRLMDEEQMIENETEAKIQGISVSELRVVQTIYFMDERQYCDNCKTSIFDYHRSCTKCSFELCLICCRELRSGQLVGGADPIMLEFSSKGRGYLHGEKVDGSVNQTESNDVAKPVVRKWSRSGWHAESNGRIPCPKVGDECNHGFLELRSVLGQHFITDLLCKANALAQTFELGTPDNFCMCSRLDRNTDVRYHDTRKAASRSDSGDNYLYCPRAAQPQDEDLWHFQWHWEKGEPVIVSHVVDCASGLSWEPLVMWRAFRQLSNTRREQHLNVKAIDCLDLCEVEINIHQFFTGYTKARGDWLDWPKILKLKDWPSSCLFEERLPRHCAEFICSLPFKEYTNPLGGFLNLAVKLPLKCLRPDLGPKTYIAYGFPQELGRGDSVTKLHYDICDAVYVLAHIAEVQWEPKHLTAIEKLKQKHFEQDKRELLSDDQDGETNVDTHYNISSALNSLEKQNSVQVLENKSGCCDEKEADQFHQPSAGSEDGLSCGSELNEVDRANMKGESDLSFAGDGSEGALWDIFRRQDVPKLEEYLRKHFREFRHINCRPLKQVIHPIHDQTFYLTVEHKRKLKEEYGIEPWTFIQKLGDAVFIPAGCPYQLRNLKVALDFVSPENVGECFRLSDEIRTLPVNHVSAEDKLEVKKMTLYAMQDVITTLEKAKV 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03943 826 ProSiteProfiles Zinc finger RING-type profile. 75 122 IPR001841 -
Viun7g03943 826 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 26 824 IPR045109 GO:0032454|GO:0033169
Viun7g03943 826 Pfam JmjC domain, hydroxylase 682 772 IPR003347 -
Viun7g03943 826 ProSiteProfiles JmjC domain profile. 508 791 IPR003347 -
Viun7g03943 826 SUPERFAMILY Clavaminate synthase-like 388 816 - -
Viun7g03943 826 SMART cupin_9 489 791 IPR003347 -
Viun7g03943 826 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 72 137 IPR018866 -
Viun7g03943 826 Gene3D Cupin 374 800 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03943 Viun-Chr7 39246768 39253357 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun7g03943 JmjC 3.1e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03943 K15601 - gmx:100805723 1210.67