Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03942 ATGGCAACTCATCCTCCCATGGTTCTGCCCATACGTTTCTTCAAGGCCATTCTCAAATCAAATCTTCAAAGGATTAAAATTCCCGACAAGTTTACAAACATATACGGAGGGATGTTGTGGAATCCGGTGTTTCTCCGGCCACCAGATGACACTGAATGGAAAGTGCACTGGACCGAACAGAACGGTGAGATCTGGTTCGAGAAGGGTTGGAAGGAGTTTGTTGAAAACTATTCCCTGGATCACGGTCACTTTGTTTTCTTTACGTTTGATGGAACTTCTAAGATTGATGTACTCATACTTCATCAGAGTTTCCACGATCCTTCTCCTCACACTTCTGAGCAACGTGAAAGCCCTGACCATAGTGACGATGAAGAAGAAGAAGAGCCTGATTCTGACCAGAACCAGATCGTTAAATATGATGATGAGGTTAGTGAAGGAAATTTATCATTGAATTGGCCAAGGGACGCTAGAGCAAGGGAATTGGCAAAGAAGTTCATCTCCTGCAATCCATTTTTCACTGTTTTGATAAGGCATTATAATCTCACAGAGCACAGGCTGAATCTTCCAAATTTGAAGGGTTACATTGATAAGGGGAAGAAGTATGTTACGGTGGAAGTTGGAGGAAAATCATGGAGTTTGAAGTTGGTGCGTTATTCTTCTGACCGTATACGCATGGGATTAGGTTGGAGAACGTTTGCAGGGGAGAATGGTTTGGAAGGTGGAGATGTTTGTATCTTTGAACTCATCTCCAGAAATGATCATGTTTTCAAAGTTCACATCTTCAAAAGGCAGAGTTAA 798 0.4223 MATHPPMVLPIRFFKAILKSNLQRIKIPDKFTNIYGGMLWNPVFLRPPDDTEWKVHWTEQNGEIWFEKGWKEFVENYSLDHGHFVFFTFDGTSKIDVLILHQSFHDPSPHTSEQRESPDHSDDEEEEEPDSDQNQIVKYDDEVSEGNLSLNWPRDARARELAKKFISCNPFFTVLIRHYNLTEHRLNLPNLKGYIDKGKKYVTVEVGGKSWSLKLVRYSSDRIRMGLGWRTFAGENGLEGGDVCIFELISRNDHVFKVHIFKRQS 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03942 265 SUPERFAMILY DNA-binding pseudobarrel domain 12 101 IPR015300 -
Viun7g03942 265 MobiDBLite consensus disorder prediction 106 134 - -
Viun7g03942 265 Pfam B3 DNA binding domain 171 263 IPR003340 GO:0003677
Viun7g03942 265 Pfam B3 DNA binding domain 20 94 IPR003340 GO:0003677
Viun7g03942 265 CDD B3_DNA 171 262 IPR003340 GO:0003677
Viun7g03942 265 Gene3D - 10 104 IPR015300 -
Viun7g03942 265 SUPERFAMILY DNA-binding pseudobarrel domain 168 263 IPR015300 -
Viun7g03942 265 PANTHER B3 DOMAIN-CONTAINING 12 258 - -
Viun7g03942 265 ProSiteProfiles B3 DNA-binding domain profile. 171 264 IPR003340 GO:0003677
Viun7g03942 265 CDD B3_DNA 12 100 IPR003340 GO:0003677
Viun7g03942 265 Gene3D - 153 264 IPR015300 -
Viun7g03942 265 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Viun7g03942 265 SMART B3_2 13 103 IPR003340 GO:0003677
Viun7g03942 265 SMART B3_2 171 264 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03942 Viun-Chr7 39243912 39245226 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03942 13 249 REM Transcription Factor Family AT4G31640 28.514 8.16e-15 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun7g03942 B3 2.4e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03942 - - vun:114192686 540.421