Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03927 ATGGCGGCATCATCTTCCTCAGCATCACTCTTTGGCTTCAGAGAAGACGATCAGAACCAGATGAAGCAACAGCATTCCTTGACACCATCTTCGTCAGCAACACCAGCTGCACCACCCCAGAAGAAAAAGAGAAACCAACCTGGAACACCATATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGTAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTACACAGAAGAGGACACAACCTGCCTTGGAAGCTTAAGCAGAAGACTACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGCGTCCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACAGGGATTAAGAAACACTACTCTCGCAAACACGGTGAGAAGAAGTGGAAGTGCGACAAGTGCTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCCCATTCTAAGACTTGTGGCACCAGAGAATATCGATGTGATTGTGGCACACTCTTCTCCAGGAGGGACAGTTTCATCACCCACAGGGCGTTCTGCGATGCACTTGCTCAAGAGAGTGCAAGACAGCCACCGAACCTTGGCGCCGCTATCGGCACCCACCTCTTCGGAACCACCGCCAACACCATCCCCCTGAACCTTTCTCAGGTTGCTTCTCACATTTCCAACATCCAAGACCCCAACACCCAACCAACAGAACTCCTCCGCCTCGGTGGCGCCGCCGCCGCCAGAACCTCCCAATTCGACCATCTCCTAGGTTCTCCCTTCAGACCCTCCCAACAACAACCACCCTTCTTCATGGAACCTAACCAAAACTACCACCCCGACCAACAACAAGGGCTACTCCAAAACAAACCCTTCCAACAAGGACTGATGCAGATCCCTGATCACCTCACCAACACCAACTCACCCTTCAACCTTCCCTTCCTTTCAAACACCACCAACAATGCTTCATTCTCCGAAAACTTCAACACCACCAACAACAACACCAGCAACAACAACGAAGGCAATAACTTCTTCACAACCTCAAGCGCTCCTTCTCTCTTCAGCAACAACAACAACAACAACGTTGTCAGCTCAAACGTCAATGCCAATGCACTGTCTCACATGTCCGCAACTGCACTGCTTCAGAAAGCCGCTCAGATGGGTGCATCTTCGAGCAACAGCACCGCTTCGCTGCTGAAAAGCTTCGGAAGCGCGTCCTCCAGCAGCGGCTCAAAGTCCGAGCAACACAGGCCACTGGTGAATGCTGCAAACTACGGCGGCGGAATGTTCGGAGGGAACGTGAACGAACAGGGTAACAGCAACCTGCAAGATCTGATGAACTCGTTCGCTGTTAGTGGAACCTCTTCCATTTTCGAAGGTGGGTTTGAAGCGTATGATCATAACAGTAATAATAACAACAGGGAGGGAAAAGTGCATGCAATGAGTGGGAGCAGCAGCATGGGGGGGTCCGATAGACTCACCCGCGACTTTCTGGGTGTGGGTCAGATTGTTAGAGGCATGAGTGGGAGTGGAGGAGTTGCACAGAGAGAACAACAGCAACAACAACATGGCTTCAACTTGAGTTCTTTGGAAGCAGATCAAAGAAATAACAGTAACAGCAATAATAATAACAACAATGCTGCGCCGTCAGGTCAAGCTTTTGGAGGTGGTGGAGGGAATTTTCAGTGA 1716 0.5 MAASSSSASLFGFREDDQNQMKQQHSLTPSSSATPAAPPQKKKRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPNLGAAIGTHLFGTTANTIPLNLSQVASHISNIQDPNTQPTELLRLGGAAAARTSQFDHLLGSPFRPSQQQPPFFMEPNQNYHPDQQQGLLQNKPFQQGLMQIPDHLTNTNSPFNLPFLSNTTNNASFSENFNTTNNNTSNNNEGNNFFTTSSAPSLFSNNNNNNVVSSNVNANALSHMSATALLQKAAQMGASSSNSTASLLKSFGSASSSSGSKSEQHRPLVNAANYGGGMFGGNVNEQGNSNLQDLMNSFAVSGTSSIFEGGFEAYDHNSNNNNREGKVHAMSGSSSMGGSDRLTRDFLGVGQIVRGMSGSGGVAQREQQQQQHGFNLSSLEADQRNNSNSNNNNNNAAPSGQAFGGGGGNFQ 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03927 571 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Viun7g03927 571 MobiDBLite consensus disorder prediction 1 54 - -
Viun7g03927 571 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 532 IPR031140 -
Viun7g03927 571 FunFam protein indeterminate-domain 5, chloroplastic-like 124 203 - -
Viun7g03927 571 MobiDBLite consensus disorder prediction 1 39 - -
Viun7g03927 571 MobiDBLite consensus disorder prediction 541 571 - -
Viun7g03927 571 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Viun7g03927 571 MobiDBLite consensus disorder prediction 477 499 - -
Viun7g03927 571 Pfam Zinc-finger double-stranded RNA-binding 70 92 IPR022755 -
Viun7g03927 571 SUPERFAMILY beta-beta-alpha zinc fingers 69 166 IPR036236 -
Viun7g03927 571 FunFam protein indeterminate-domain 12-like 49 117 - -
Viun7g03927 571 Gene3D Classic Zinc Finger 124 203 - -
Viun7g03927 571 SMART c2h2final6 111 141 IPR013087 -
Viun7g03927 571 SMART c2h2final6 70 92 IPR013087 -
Viun7g03927 571 SMART c2h2final6 146 166 IPR013087 -
Viun7g03927 571 MobiDBLite consensus disorder prediction 541 560 - -
Viun7g03927 571 Gene3D Classic Zinc Finger 53 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03927 Viun-Chr7 39124518 39131468 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03927 10 521 IDZ Gene Family AT2G02070 46.284 1.28e-134 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun7g03927 zf-C2H2_jaz 3.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03927 K25870 - gmx:100799389 775.007