Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03893 ATGTATGGGAGTGAATTATCGAGAAATTTGCATACAGGTTCTCAAATTCAGATTCATCTCATGGCTTCCCATCTTGGTCAGAGGAGTGCAACCCTTCCAATCCATTTTTTCAAGATTATTCTTGAAACTAATGGTGAAAGGATAAAAGTACCTAGTAAGTTTACAAGGAAACATGGGAGTTGTCTGTCAAATCCAGTGTCTCTTAGTACTCCAGATTCAAAGAAATGGATAGTATATTGGACACAAGAGGATGGTGAGGTTTGGTTCGATAAGGGTTGGAAAGAGTTTGCTGAAAATTATTCCTTGAGTTATGGATATTTTGTGCTGTTCAGATTCAAAGGAACTTCCCAGATTGATGTAATCATACTTGACAAAAGTTCTGTAGAATTAGATTATTTTTCTTCTGGGAAAGGACCAGTTAACACCATGAATGCAACTCAGATGGGGCAAGAGGCAAGACCAATGCCATTAATGGTCCCTTCTCAACCTCGTGGGAAAACCCAAATGTGGAATGTGGAAAGAGACCCCAATGTGCAACAAGTGTATGCAGATAAGGGTGGTCCTTCCCATCAAGGGACAAATGTTCAGAAAAAAACCAAGCAGCAACCGGATCGGATGAGTCCTACTCAAGGTGGAACATGTCTGAATAGGCCAAGGTCACTAAAAGCTCAGAAAGTAACCAAGAAATTTAAATCAAAGCATCCTTACTTCACGCTTTTGATAGAACAGTCTAAGTTGGAAGAAAATGCTACGAAACATGTGCCAAAGTTTTTGGATTGTACGAGGGGCCAGGTGGATGTGATGTTGCAGATGGAGAACAGGGTTTGGTGGGTGAAGTTAATCTGTTGTCGTGAAAAATATGATCTTTTCTCTTCTGGTTGGCCTAAGTTTGCAAAAGAGAGTAATTTGGAAGATGGTGACGTTTGTGTCTTTGAGTTGATTAATACTGCAATTCCGCAGCTTCAAGTTCATGTCTTCAGAAGCTAG 987 0.4022 MYGSELSRNLHTGSQIQIHLMASHLGQRSATLPIHFFKIILETNGERIKVPSKFTRKHGSCLSNPVSLSTPDSKKWIVYWTQEDGEVWFDKGWKEFAENYSLSYGYFVLFRFKGTSQIDVIILDKSSVELDYFSSGKGPVNTMNATQMGQEARPMPLMVPSQPRGKTQMWNVERDPNVQQVYADKGGPSHQGTNVQKKTKQQPDRMSPTQGGTCLNRPRSLKAQKVTKKFKSKHPYFTLLIEQSKLEENATKHVPKFLDCTRGQVDVMLQMENRVWWVKLICCREKYDLFSSGWPKFAKESNLEDGDVCVFELINTAIPQLQVHVFRS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03893 328 PANTHER B3 DOMAIN-CONTAINING 34 324 - -
Viun7g03893 328 ProSiteProfiles B3 DNA-binding domain profile. 33 126 IPR003340 GO:0003677
Viun7g03893 328 MobiDBLite consensus disorder prediction 184 217 - -
Viun7g03893 328 Pfam B3 DNA binding domain 44 117 IPR003340 GO:0003677
Viun7g03893 328 Pfam B3 DNA binding domain 262 327 IPR003340 GO:0003677
Viun7g03893 328 SUPERFAMILY DNA-binding pseudobarrel domain 230 327 IPR015300 -
Viun7g03893 328 SUPERFAMILY DNA-binding pseudobarrel domain 34 126 IPR015300 -
Viun7g03893 328 CDD B3_DNA 251 327 IPR003340 GO:0003677
Viun7g03893 328 ProSiteProfiles B3 DNA-binding domain profile. 237 328 IPR003340 GO:0003677
Viun7g03893 328 Gene3D - 218 328 IPR015300 -
Viun7g03893 328 CDD B3_DNA 35 124 IPR003340 GO:0003677
Viun7g03893 328 Gene3D - 30 127 IPR015300 -
Viun7g03893 328 MobiDBLite consensus disorder prediction 184 218 - -
Viun7g03893 328 SMART B3_2 236 327 IPR003340 GO:0003677
Viun7g03893 328 SMART B3_2 36 126 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03893 Viun-Chr7 39011754 39013518 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03893 32 327 B3 DNA Binding Superfamily AT3G18990 27.273 2.59e-29 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun7g03893 B3 4.1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03893 - - vun:114192490 681.789