Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03873 ATGGCTGCGAAGGAAGATAATCGAATATTTGTGGGTGGTTTATCTTGGGACGTCACTGAGCGTCAACTCGAGCATGCCTTTGATCGTTACGGCAAAATTCTCGAATGCCAGATCATGATGGAAAGGGATACAGGCCGTCCACGTGGATTTGGGTTTATCACATTTGCAGATCGTAGGGGAATGGAGGATGCAATCAAGGAAATGCATGGAAGGGAAATTGGTGATCGCATCATCTCTGTCAACAAGGCGCAGCCTAAGATGGGGGGTGATGATATAGACCAAGGTTACAGAGGTAGCAGCTACTCATCAGGTGGTAGGGGAAGCTACGGTGCTGGAGATAGGATAGGTCAAGATGACTGCTTCAAATGTGGGCGTCCGGGACACTGGGCCCGAGATTGTCCTTTGGCAGGAGCTGGAGGTGGAGGTGGTCGTGGTCGTGGTGGCAGTTCATTTTCTTCACACCCAAGGTTCGGAGGAGGTGGTGGTGGACACGGTGATCGCCTTGGTGGTGAACGTGATCGATATGTGGATGACCGTTATGATGGAGGACGCTATGGAGATAGGGATCGTTTTGACAACCGTGACTACAAATATGGCAGCCGTGACCGCTATACCAGTGACAGGTACCCAAGCAGTGGAGATCGTTTTGCAAGCGATCGATATGGCAGTGGCTCAGATCATTACCCACAAAATGGTTATGGAAAGGAAAGAGGGTATGAGCGATACGGTGGTCCACGAGGCGGCGCTGATAGGTATGGAAGTGGAATAGCTTCTGGTCGAGATGAAGGAAGGAGTTATAGGGGTAGGCCTGGTCCATATGACCGTCCAAGCAGGGGCTCTCGTCCATCACTCGACCGTTACTGA 864 0.5127 MAAKEDNRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEMHGREIGDRIISVNKAQPKMGGDDIDQGYRGSSYSSGGRGSYGAGDRIGQDDCFKCGRPGHWARDCPLAGAGGGGGRGRGGSSFSSHPRFGGGGGGHGDRLGGERDRYVDDRYDGGRYGDRDRFDNRDYKYGSRDRYTSDRYPSSGDRFASDRYGSGSDHYPQNGYGKERGYERYGGPRGGADRYGSGIASGRDEGRSYRGRPGPYDRPSRGSRPSLDRY 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03873 287 SUPERFAMILY Retrovirus zinc finger-like domains 103 137 IPR036875 GO:0003676|GO:0008270
Viun7g03873 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Viun7g03873 287 PANTHER SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL 4 280 - -
Viun7g03873 287 MobiDBLite consensus disorder prediction 139 287 - -
Viun7g03873 287 SMART c2hcfinal6 119 135 IPR001878 GO:0003676|GO:0008270
Viun7g03873 287 Gene3D - 116 144 - -
Viun7g03873 287 FunFam glycine-rich RNA-binding protein RZ1C 1 115 - -
Viun7g03873 287 Gene3D - 1 115 IPR012677 -
Viun7g03873 287 ProSiteProfiles Zinc finger CCHC-type profile. 120 134 IPR001878 GO:0003676|GO:0008270
Viun7g03873 287 SMART rrm1_1 8 81 IPR000504 GO:0003723
Viun7g03873 287 SUPERFAMILY RNA-binding domain, RBD 4 112 IPR035979 GO:0003676
Viun7g03873 287 Pfam Zinc knuckle 120 134 IPR001878 GO:0003676|GO:0008270
Viun7g03873 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Viun7g03873 287 MobiDBLite consensus disorder prediction 166 209 - -
Viun7g03873 287 MobiDBLite consensus disorder prediction 84 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03873 Viun-Chr7 38800283 38805549 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03873 9 88 C2H2 Transcription Factor Family AT2G19380 43.750 4.35e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03873 - - gmx:100809519 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g03873 7 38800283 38805549 Viun7g03873 7 38800283 38805549 ECH