Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03855 ATGAAGGTTTTCGTGAAGACTCTCAAAGGCACTCACTTCGAAATCGAAGTGCAGCCTCAGAATACGGTTTCTGAAGTGAAGAAAAGTATTGAAACTGTTCAGGGTGCAGATGTTTATCCTGCTGCCCAGCAAATGCTAATTCACCAAGGGAAAGTTCTGAAGGATGCTACTACCTTGGAGGATAATAACGTAGCTGAAAGTAGTTTCATTGTAATTATGCTATCAAAGAGTAAGAGCACTTCTGGTGAAGGATCTACTACAACTGCACCATCGACCAAGACACCACAGACTAGTGCACCTCCTACTTCAACAGCGCCAGTGTCAACAGCTCTTCAAGCTCCAGCTGCAACTGAGGCACCGCCGGAAACTGTTACTGCACCTGCACCTGCACCTGTATCTACACCTTCAGTTCCAGCTCCTGCTTCTATTTCTTCAGGAACTCCTGTGGAGGGGTCTGATATCTATGGGCAGGCGGCATCCAATCTCGTTGCTGGAAGTCATTTGGAGGGAACTATTCAGCAAATTATTGACATGGGTGGAGGGAGCTGGGACAGGGATACTGTTGTCCGTGCTCTTCGAGCTGCCTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCGGGTATCCCTGAGCAAGCTGAAGCTCCACTTGTAGCCAGAGCTCCTGCAGGTGCGCAACCCGCAAATCCTCCTGCAGCTGCTGCTCCACAAACAGCACAACCTGCTCCGGTTACCTCAACTGGGCCTAATGCTAATCCTTTAGACCTTTTTCCGCAGGGCCTTCCTAATGTGGGTGGTTCTGGTGCTGCTGGTGCTGGCTCATTGGATTTTCTACGCAACAGTCAACAATTCCAAGCCTTGCGGGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTACAGGAGCTCGGCAAACAAAATCCTCATCTTATGAGGTTGATTCGAGATCATCAAGCTGATTTCCTTCGCCTGATAAATGAACCTGTGGAAGGTGGCGAAGGGAATATATTGGGGCAGATGGCTGGTGGCATGCCTCAAGCAGTGACCGTCACTCCTGAGGAGCGCCAAGCTATTGAGCGTCTTGAAGCAATGGGTTTTGATCGTGCGATCGTATTGGAGGTTTACTTCGCGTGTAACAAAAATGAGGAATTGGCTGCGAACTACCTTATAGATCACATGCACGAATTCGATGAACACCAATAG 1212 0.4843 MKVFVKTLKGTHFEIEVQPQNTVSEVKKSIETVQGADVYPAAQQMLIHQGKVLKDATTLEDNNVAESSFIVIMLSKSKSTSGEGSTTTAPSTKTPQTSAPPTSTAPVSTALQAPAATEAPPETVTAPAPAPVSTPSVPAPASISSGTPVEGSDIYGQAASNLVAGSHLEGTIQQIIDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPLVARAPAGAQPANPPAAAAPQTAQPAPVTSTGPNANPLDLFPQGLPNVGGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNILGQMAGGMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLIDHMHEFDEHQ 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03855 403 MobiDBLite consensus disorder prediction 79 111 - -
Viun7g03855 403 FunFam UV excision repair protein RAD23 homolog 161 211 - -
Viun7g03855 403 NCBIfam UV excision repair protein Rad23 1 400 IPR004806 GO:0006289
Viun7g03855 403 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 354 395 IPR015940 -
Viun7g03855 403 SMART CBM 274 317 IPR006636 -
Viun7g03855 403 SUPERFAMILY UBA-like 338 400 IPR009060 GO:0005515
Viun7g03855 403 Gene3D - 161 211 - -
Viun7g03855 403 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Viun7g03855 403 CDD Ubl_Rad23 1 74 - -
Viun7g03855 403 Gene3D - 1 80 - -
Viun7g03855 403 Gene3D - 267 332 IPR036353 GO:0003684|GO:0006289|GO:0043161
Viun7g03855 403 MobiDBLite consensus disorder prediction 223 249 - -
Viun7g03855 403 SUPERFAMILY UBA-like 165 217 IPR009060 GO:0005515
Viun7g03855 403 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 390 - -
Viun7g03855 403 MobiDBLite consensus disorder prediction 79 149 - -
Viun7g03855 403 FunFam UV excision repair protein RAD23 homolog 348 396 - -
Viun7g03855 403 SMART ubq_7 1 75 IPR000626 GO:0005515
Viun7g03855 403 Gene3D - 349 396 - -
Viun7g03855 403 SUPERFAMILY XPC-binding domain 273 338 IPR036353 GO:0003684|GO:0006289|GO:0043161
Viun7g03855 403 FunFam UV excision repair protein RAD23 1 80 - -
Viun7g03855 403 Pfam UBA/TS-N domain 171 206 IPR015940 -
Viun7g03855 403 Pfam UBA/TS-N domain 357 392 IPR015940 -
Viun7g03855 403 CDD UBA1_Rad23_plant 162 211 - -
Viun7g03855 403 Pfam XPC-binding domain 276 331 IPR015360 GO:0003684|GO:0006289|GO:0043161
Viun7g03855 403 SUPERFAMILY Ubiquitin-like 1 83 IPR029071 -
Viun7g03855 403 FunFam UV excision repair protein RAD23 B 267 332 - -
Viun7g03855 403 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Viun7g03855 403 SMART uba_6 168 208 IPR015940 -
Viun7g03855 403 SMART uba_6 357 394 IPR015940 -
Viun7g03855 403 PRINTS DNA repair protein Rad23 signature 368 382 IPR004806 GO:0006289
Viun7g03855 403 PRINTS DNA repair protein Rad23 signature 383 398 IPR004806 GO:0006289
Viun7g03855 403 PRINTS DNA repair protein Rad23 signature 351 367 IPR004806 GO:0006289
Viun7g03855 403 PRINTS DNA repair protein Rad23 signature 302 324 IPR004806 GO:0006289
Viun7g03855 403 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 166 209 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03855 Viun-Chr7 38692933 38696614 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03855 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 1.47e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03855 K10839 - gmx:100814162 583.178