Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03853 ATGAAGGTTTTCGTGAAGACTCTCAAAGGCACTCACTTCGAAATCGAAGCGCAGCCGCAGGATACGGTTTCTGAAGTGAAGAAAAGTATTGAAACTATTCAGGGTGCAGATGTCTATCCTGCTGCCCAACAAATGCTAATTCACCAAGGGAAAGTTCTGAAGGATGCTACTACCTTAGAGGAGAATAACGTAGCTGAAAATAGTTTCATTGTAATTATGCTATCAAAGAGTAAGAGCACATCTGGTGAAGGTTCTACTACTGCACCATCGACCAAGACACCACAGACTAGTGCACCTCCTACTTCAACAGCGCCAGTGTCATCAGCTCCTCAAGCTCCAGATACAACTGAGGCACCGCCAACTACTGTTACTGCACCTGTATCTTCAGCTCCAGCCCCTGCTTCTATTTCTTCAGGAACTCCTGTGGAGGGATTTGATATCTATGGGCAGGCGGCATCCAATCTTGTTGCTGGAAGCAATTTGGAGGGGACAATCCAGCAAATTATTGACATGGGTGGAGGGAGCTGGGATAGGGATACTGTTGTCCGTGCTCTTCGAGCTGCCTATAACAATCCTGAGAGAGCTGTTGAATATTTGTATTCAGGTATCCCTGAGCAAGCTGAAGCTCCTCTTGTAGCCAGAGCGCCTGCAGGTGCTCAACCTGCAAATCCTCCTGCCGCTGCTGCTCCACAAACAGCACAACCTGCTCCGATTACCTCAACTGGACCTAATGCTAATCCCTTAGACCTTTTTCCGCAGGGCCTTCCCAATATGGGTTCTGGTGCTGCTGGTGCTGGCTCGTTGGATTTTCTACGCAACAGTCATCAATTCCAAGCCTTGCGGGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTACAGGAGCTCGGCAAGCAAAATCCTAATCTTATGAGGTTGATTCGAGATCATCAAGCTGATTTCCTTCGCCTGATAAATGAACCTGTGGAAGGTGGCGAAGGGAATATATTGGGGCAGCTGGCTGGTGGCATGCCTCAAGCAGTGACCGTCACTCCCGAGGAGCGCCAAGCTATTGAGCGTCTTGAAGCAATGGGTTTTGATCGTGCGATCGTATTGGAGGTTTACTTCGCGTGTAACAAAAATGAGGAATTGGCTGCGAACTACCTTATAGATCACATGCACGAGTTCGATGAACACCAATAG 1188 0.4823 MKVFVKTLKGTHFEIEAQPQDTVSEVKKSIETIQGADVYPAAQQMLIHQGKVLKDATTLEENNVAENSFIVIMLSKSKSTSGEGSTTAPSTKTPQTSAPPTSTAPVSSAPQAPDTTEAPPTTVTAPVSSAPAPASISSGTPVEGFDIYGQAASNLVAGSNLEGTIQQIIDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPLVARAPAGAQPANPPAAAAPQTAQPAPITSTGPNANPLDLFPQGLPNMGSGAAGAGSLDFLRNSHQFQALRAMVQANPQILQPMLQELGKQNPNLMRLIRDHQADFLRLINEPVEGGEGNILGQLAGGMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLIDHMHEFDEHQ 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03853 395 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 346 387 IPR015940 -
Viun7g03853 395 Gene3D - 1 80 - -
Viun7g03853 395 MobiDBLite consensus disorder prediction 79 136 - -
Viun7g03853 395 CDD UBA1_Rad23_plant 155 204 - -
Viun7g03853 395 MobiDBLite consensus disorder prediction 216 246 - -
Viun7g03853 395 FunFam UV excision repair protein RAD23 homolog 154 204 - -
Viun7g03853 395 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 382 - -
Viun7g03853 395 FunFam UV excision repair protein RAD23 B 259 324 - -
Viun7g03853 395 Gene3D - 259 324 IPR036353 GO:0003684|GO:0006289|GO:0043161
Viun7g03853 395 NCBIfam UV excision repair protein Rad23 1 392 IPR004806 GO:0006289
Viun7g03853 395 SMART uba_6 349 386 IPR015940 -
Viun7g03853 395 SMART uba_6 161 201 IPR015940 -
Viun7g03853 395 Pfam UBA/TS-N domain 349 384 IPR015940 -
Viun7g03853 395 Pfam UBA/TS-N domain 164 199 IPR015940 -
Viun7g03853 395 CDD Ubl_Rad23 1 74 - -
Viun7g03853 395 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Viun7g03853 395 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Viun7g03853 395 SUPERFAMILY UBA-like 158 210 IPR009060 GO:0005515
Viun7g03853 395 PRINTS DNA repair protein Rad23 signature 294 316 IPR004806 GO:0006289
Viun7g03853 395 PRINTS DNA repair protein Rad23 signature 343 359 IPR004806 GO:0006289
Viun7g03853 395 PRINTS DNA repair protein Rad23 signature 360 374 IPR004806 GO:0006289
Viun7g03853 395 PRINTS DNA repair protein Rad23 signature 375 390 IPR004806 GO:0006289
Viun7g03853 395 Pfam XPC-binding domain 268 323 IPR015360 GO:0003684|GO:0006289|GO:0043161
Viun7g03853 395 SMART CBM 266 309 IPR006636 -
Viun7g03853 395 SMART ubq_7 1 75 IPR000626 GO:0005515
Viun7g03853 395 MobiDBLite consensus disorder prediction 79 138 - -
Viun7g03853 395 Gene3D - 341 388 - -
Viun7g03853 395 FunFam UV excision repair protein RAD23 homolog 340 388 - -
Viun7g03853 395 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 159 202 IPR015940 -
Viun7g03853 395 FunFam UV excision repair protein RAD23 1 80 - -
Viun7g03853 395 SUPERFAMILY UBA-like 330 392 IPR009060 GO:0005515
Viun7g03853 395 Gene3D - 154 204 - -
Viun7g03853 395 SUPERFAMILY XPC-binding domain 265 330 IPR036353 GO:0003684|GO:0006289|GO:0043161
Viun7g03853 395 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03853 Viun-Chr7 38662768 38666427 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03853 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 6.53e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03853 K10839 - gmx:100814162 583.563