Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03852 ATGCCCGATTCTCGGAAACAACTGGCTTCTAAACCGAAGCAGAGGCCTCACCACTCCGTGCAAGAGTCCAAAGCAACGAGAAAACTGCGTATAATTTACAACGATCCTGATGCCACTGATTCATCCGATGATGAGTCAGAGGTGATTCAGAGATCGAAAAAAGCAAAGAGAAGCTTTTGTGAGATCCCTCTCCCACCTCTTCCTGAGGCTTTCACCTCTCCTGAAACCAATTCCTTCGAGGTGAATAGCAACAGCAATGCGGTGAGGGTGAGGGTTTGCATTGAAGGTCAACCCCAGACAAAGAAGAGGGTTTTGACCCAAACCCCATCATCAAGGAGGAACACTTCTGGGAAATACAGAGGTGTTAGGCAGAGAAAATGGGGTAAATGGGCTGCTGAGATTCGTGACCCTTTTCAGAGTACTCGTATATGGCTTGGTACTTTCAACACTGCGGAAGAGGCTTCTCAAGCCTACGAGGCCAGAAGGCTTGAGTTTGAAGCCAAGGCTAAGGCACGAGCCTACAAAAATATTTCTGAGCCTTTGCCCACAACTTCTGAAAAGAGTATATGCTGTAACTCTTCTGATGCTGCTGCTGCTGCTGCTGTGTCTGTTTCCGAGAAGTTTTCTACTACCTCTGATGACTCAGAAGATGTTTTGTCGCACCCATCACCTTCTTCTGTGCTTGAGTTGGATTCTTCATCTTCCAGACCCATTGACAATGGTAGTGTTTTGAGTGAAGAAGCTTTTGAGGCTAATGATTTGGTTTCTGAATTTGCTGAACTTGAAATTCCAGATTTGAGTCTTTTGAACTTGCCATCACTATTCAACAGTTCTACTGCTGCTCTTGCGTCTGGTGCCGAACCAGACTTTGGTCTTGATTTTGATTGGGTATCTCTTGAGGATTATGGTCAGGGATTTGACGATTTTGGTGGCTTGGAAGATATTCGTATTTGTGGATTTGATAACAATGAGCCTAGTAAGCTTCCTGATTTTGATTTTGGCGATTTCTGTGCTGAAGAGTTTGCTGGTTGGACCGAGGAGCCCCTCAACATACCTTGTGCCTAA 1065 0.4535 MPDSRKQLASKPKQRPHHSVQESKATRKLRIIYNDPDATDSSDDESEVIQRSKKAKRSFCEIPLPPLPEAFTSPETNSFEVNSNSNAVRVRVCIEGQPQTKKRVLTQTPSSRRNTSGKYRGVRQRKWGKWAAEIRDPFQSTRIWLGTFNTAEEASQAYEARRLEFEAKAKARAYKNISEPLPTTSEKSICCNSSDAAAAAAVSVSEKFSTTSDDSEDVLSHPSPSSVLELDSSSSRPIDNGSVLSEEAFEANDLVSEFAELEIPDLSLLNLPSLFNSSTAALASGAEPDFGLDFDWVSLEDYGQGFDDFGGLEDIRICGFDNNEPSKLPDFDFGDFCAEEFAGWTEEPLNIPCA 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03852 354 ProSiteProfiles AP2/ERF domain profile. 118 178 IPR001471 GO:0003700|GO:0006355
Viun7g03852 354 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Viun7g03852 354 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Viun7g03852 354 SUPERFAMILY DNA-binding domain 118 165 IPR016177 GO:0003677
Viun7g03852 354 MobiDBLite consensus disorder prediction 1 34 - -
Viun7g03852 354 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
Viun7g03852 354 SMART rav1_2 118 181 IPR001471 GO:0003700|GO:0006355
Viun7g03852 354 MobiDBLite consensus disorder prediction 1 56 - -
Viun7g03852 354 MobiDBLite consensus disorder prediction 100 117 - -
Viun7g03852 354 MobiDBLite consensus disorder prediction 100 122 - -
Viun7g03852 354 CDD AP2 118 165 IPR001471 GO:0003700|GO:0006355
Viun7g03852 354 Gene3D AP2/ERF domain 117 176 IPR036955 GO:0003700|GO:0006355
Viun7g03852 354 MobiDBLite consensus disorder prediction 212 239 - -
Viun7g03852 354 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03852 Viun-Chr7 38648419 38650623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03852 21 353 AP2-EREBP Transcription Factor Family AT1G68550 34.311 4.48e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Viun7g03852 AP2 2.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03852 - - gmx:102660769 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g03852 7 38648419 38650623 Viun7g03852 7 38648419 38650623 ECH