Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03822 ATGATCTGGGTTATTGTTTTGAAGTTGCTCATAGTCTATTTGTCACAGCTTGTGCTTATTGTTTCAGCTCAGAAAGGAAAGTGTCCACCATCTTTTGATTGTGGATTTCTTGGCCACTTTCAGTTTCCTTTCACAACCACTGAGCAACAACACTGCGGCCTATTGGCCATACATGGCTGTCAACAACTTTCTCCCTCCGCTCCCAAAACTATCCAACTAGGCACCTCCCCATCAACCTCGTACTCTGTTCTAAAGGTAGAACCTCGTACCATAATTATCGCAGATGATAAACAACAACGTTATTTGAGTAACAGAAGTTGCAAAGCGTTCAGCAAGAATGTTACTCTTCCTCAAACCTCTCCTTTAGCTTCTTTCAGCATCAAATATAATATCACCATCTTCAGATGCAATCACTCAATCAAGCCCTCCCTTTCAAAGGATTTTTATAAATATTCAAACTGTTCTGAGTACGAAATCATCTATGGCCCTCCAAATGCACTAACTCTTCCAGGTTTCCAGTGGCCCAGCTCTTTAGCACCATGCTCAACCACTCAGCTTCCTGTAGAAGGAATTCCTACCGACGACCCCTTTCAATTTCTAACAAGTAGTATCGCTATTGAAGTTCAGTTATCTAATCAATGTGAAAGTTGTCTTCGTCATGGAAAAGGACGATGTTTACTTGACACTCAAGGAAAATTCTACTGCGCCACAGGGAGTGGAAGCTGGGTTCCGAAAATGGTACTGGGACTCGCATTAGCTGTTACAGTTGTTTTACTGCTAGCGATGGTCAAGATGTACCGTACAAGAAGGAAGAAGCAAAATCCAACCAATCAACGGATTGAGGTCTTTCTGAAAAAACACGGAGCCCTTCAGACTAAGAGGTATGGTTATTCTGAGATAAAGAAAGTGACCAACTGTTTCAGAAACAAACTAGGCCAAGGAGGATTCGGTAGTGTGTACAAGGGAAAACTACAGGATGGACGTTACGTTGCAGTGAAGATCCTAAACGAATTAAAAGATGACGGAGAGGAATTCATCAATGAAGTTGCTAGTATTAGCAGAACTTCTCATGTTAACATTGTTACGCTTTTGGGGTTCTGTTGCGATGGTTCTAAACGAGCTTTGGTTTATGAGTTTATGTCCAATGGATCACTTGAAAAACTTATCTATCAAGAAAATTCTCTAATCACACATCATCAATTGGACTATCAAATGTTGTATCATATTGTAATTGGTGTTGCTAGAGGACTACAATACCTGCATAAAGGCTGCAATACTAGAATTTTGCACTTTGACATCAAACCTCATAACATTCTGTTGGATGAGAATTTCAATCCCAAGATTTCAGATTTTGGTCTGGCAAAAATTTGCTCCAGAAAAGAAAGTATGGTGTCAATATTTGGTGCTAGAGGAACAGCAGGCTATATTGCTCCAGAAGTTTTTTCCAGAAATTTTGGTGTAGTTTCACATAAATCAGATGTTTACAGTTATGGAATGATGGTCTTAGAAATGATTGGAGGAAGACAGAACACTGTGACTGGGCTAGACCCCTCAAGTGAAATTTACTTTCCCGATTGGATATACAGTCGTCTTGAATCAAAACAGGAACTTGGTTTACAAAACATGCGAAATATAAGTGATGAAAAATTGGTAAGAAAGATGGCAATTGTGGGCTTATGGTGCATACAAACTCATCCTTCAGCCCGACCTCCCATAAGTAAAGTGTTGGAAATGCTAGAAAGCAAAGTTGAGTTATTGCAGATTCCACCCAAACCTTTATTGTCTTCTCCTTCAACTTCTCCCATCCATTTATCAAGTGAGACATTGTAA 1830 0.3984 MIWVIVLKLLIVYLSQLVLIVSAQKGKCPPSFDCGFLGHFQFPFTTTEQQHCGLLAIHGCQQLSPSAPKTIQLGTSPSTSYSVLKVEPRTIIIADDKQQRYLSNRSCKAFSKNVTLPQTSPLASFSIKYNITIFRCNHSIKPSLSKDFYKYSNCSEYEIIYGPPNALTLPGFQWPSSLAPCSTTQLPVEGIPTDDPFQFLTSSIAIEVQLSNQCESCLRHGKGRCLLDTQGKFYCATGSGSWVPKMVLGLALAVTVVLLLAMVKMYRTRRKKQNPTNQRIEVFLKKHGALQTKRYGYSEIKKVTNCFRNKLGQGGFGSVYKGKLQDGRYVAVKILNELKDDGEEFINEVASISRTSHVNIVTLLGFCCDGSKRALVYEFMSNGSLEKLIYQENSLITHHQLDYQMLYHIVIGVARGLQYLHKGCNTRILHFDIKPHNILLDENFNPKISDFGLAKICSRKESMVSIFGARGTAGYIAPEVFSRNFGVVSHKSDVYSYGMMVLEMIGGRQNTVTGLDPSSEIYFPDWIYSRLESKQELGLQNMRNISDEKLVRKMAIVGLWCIQTHPSARPPISKVLEMLESKVELLQIPPKPLLSSPSTSPIHLSSETL 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03822 609 SMART serkin_6 305 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g03822 609 ProSiteProfiles Protein kinase domain profile. 305 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g03822 609 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Viun7g03822 609 Gene3D Phosphorylase Kinase; domain 1 278 379 - -
Viun7g03822 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Viun7g03822 609 FunFam PR5-like receptor kinase 380 591 - -
Viun7g03822 609 Pfam Protein kinase domain 309 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g03822 609 FunFam S-receptor-like serine/threonine-protein kinase 271 379 - -
Viun7g03822 609 PANTHER RUST RESISTANCE KINASE LR10-RELATED 277 596 IPR045874 GO:0004672
Viun7g03822 609 Gene3D Transferase(Phosphotransferase) domain 1 380 594 - -
Viun7g03822 609 SUPERFAMILY Protein kinase-like (PK-like) 288 580 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03822 Viun-Chr7 38320119 38323027 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03822 1 609 Receptor kinase-like Gene Family AT5G38260 37.636 1.04e-128 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun7g03822 Pkinase 3.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03822 - - pvu:PHAVU_007G030100g 947.192