Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03790 ATGATGAACCCAAACTCCCAATTTTTTATCCTCAAACCCCTCTATTTTCGCATCACCAATTCCTTCATCATCATCTTCTACCTTCTTGCCCAAATCACTTCTTCTCAAGTCGACCCTAAATTCACTGCATGTGCACCCAAAACCTGCCCCAACAACAACCAATCTATTAGCTTTCCCTTTTACATTCAAGGAACGCAAGAATCTTACTGTGGGAGCCCCGGTTTTGAAATCTCGTGTGCCCCAGATGGCTCCCCTACCCTCAATCTCTCTCACACCCAATACTTCATTCATCAAATTTTCTACCAAGATCAGTCCCTGCGAGTGTCCAATGCTGCGTTCTCAACTTTGCAATCAAACGCCACCGGAGGTTGTCTTGTTCCAACTCAGAATCTCACTCTTCCTCCCAGTAACGAGTTCCGTGTTGCTCCAAATCAAACGGACATGGTGTTGTTCTACGGCTGTGACGCACCTTCGCTTCACGAACACAGGGTTGGGTGTTCTGCAGAAAACCAGACGAGTTCCGTTTTGGCATTGGATAAAAGAGATGAGCTTATAAGCTTTGTGGCAGCGAATTGCAAGGGTGAGGTAGTGGACACGGTTGTGGAAGATGGAATAGGAGGGGTCGGTGAAGCTTTGAGAAAAGGGTTTTTGCTGTCGTGGACTGCGAGTAACTGCAGCGTCTGCAACAGCACCGGAGGGAGGTGCGGTTTCGATTCAGATTTGTACACTTTCAGGTGTTATTGCACTGACAGAGTTCATTCTGCTAGCTGTGGTGCGGTTGATCCAGTGATTACCAATAAGAACAAGGCTACAATGGTGAAAATAGCTTCAGCAGTGGGCGTTGTTGGAATTGTAGTGGTGGTGGTCTTGGCTTGTTGGTTGAGGACAAAGATCTTTCCCTCGTCTCTTTTATTTGGGAGGGATAATCAAACCCATCATGTCATTCAGAAGTTTTTGAAGGAACACGGACCTCTTCCTATAACTAGGTACAATTATTCAGAGATTAAGAAAATTACCAACTCTTTTAAAAACAAGTTAGGGCAAGGAGGCTTCGGTAGCGTATATAAAGGGAAGTTACATGATGGATGTGTTGTTGCAGTAAAGATTTTAGGTGAATCAAGAGGCAAAGGAGAAGATTTTATCAATGAAGTCGCAAGTATTAGTACGACTTCACATGTTAACATTGTCAGACTCCTGGGATTTTGTTTCGATGGTTCTAAACGTGCTCTAATATATGAGTTTATGAGTAATGGATCTCTTGACAAGTTCATATATGAAGACAAAAATCCATTACAGGTTGCTCATGAATTGGATTGCGAGCTAATGTATAACATTGCAATTGGCATTGCTCGTGGATTAGAGTATTTACACAGAGGGTGCAACACTAGAATCTTGCATTTTGACATAAAACCTCACAACATATTACTGGATGAGAATTTTAGCCCCAAAATTTCAGATTTTGGACTTGCAAAAATATGTCCAATGAGAGAAAGTGCGATATCCATTACTGGTGCAAGAGGAACTGCAGGTTATATTGCTCCAGAAGTTTTTTGCAGAAACTTTGGCGCCGTGTCACATAAATCAGATGTTTACAGTTATGGAATGATGATCATGGAAATGGTTGGAAGAAGAAAGAATATTAAGGTTGAAATCGAGTGTTCAAGTGAATTGTATTTTCCTTATTGGATTTACGATCGTCTTGAATCAAATCAAGAGCTTGGTCTGCAAATTGTAAAGAATGAAGGTGATGACAAAATGATGAGAAAAATGGCTTTGGTAGGTTTATGGTGCATACAAACCCACCCTTCAAGTCGACCAACAATAAGTAGCGTGGTGGAAATGTTAGAGAAAAAAGTTGAATTATTGCAACTTCCGCCTAAACCGTTTTTGTCTTCTCCTTCACCATCTTCGCTTCATTTCTCAGGAGACACTATAGCTTTGTGA 1944 0.4167 MMNPNSQFFILKPLYFRITNSFIIIFYLLAQITSSQVDPKFTACAPKTCPNNNQSISFPFYIQGTQESYCGSPGFEISCAPDGSPTLNLSHTQYFIHQIFYQDQSLRVSNAAFSTLQSNATGGCLVPTQNLTLPPSNEFRVAPNQTDMVLFYGCDAPSLHEHRVGCSAENQTSSVLALDKRDELISFVAANCKGEVVDTVVEDGIGGVGEALRKGFLLSWTASNCSVCNSTGGRCGFDSDLYTFRCYCTDRVHSASCGAVDPVITNKNKATMVKIASAVGVVGIVVVVVLACWLRTKIFPSSLLFGRDNQTHHVIQKFLKEHGPLPITRYNYSEIKKITNSFKNKLGQGGFGSVYKGKLHDGCVVAVKILGESRGKGEDFINEVASISTTSHVNIVRLLGFCFDGSKRALIYEFMSNGSLDKFIYEDKNPLQVAHELDCELMYNIAIGIARGLEYLHRGCNTRILHFDIKPHNILLDENFSPKISDFGLAKICPMRESAISITGARGTAGYIAPEVFCRNFGAVSHKSDVYSYGMMIMEMVGRRKNIKVEIECSSELYFPYWIYDRLESNQELGLQIVKNEGDDKMMRKMALVGLWCIQTHPSSRPTISSVVEMLEKKVELLQLPPKPFLSSPSPSSLHFSGDTIAL 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03790 647 ProSiteProfiles Protein kinase domain profile. 340 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g03790 647 Pfam Protein kinase domain 343 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g03790 647 FunFam serine/threonine-protein kinase PBS1-like 309 414 - -
Viun7g03790 647 Gene3D Phosphorylase Kinase; domain 1 316 414 - -
Viun7g03790 647 SUPERFAMILY Protein kinase-like (PK-like) 323 616 IPR011009 -
Viun7g03790 647 Pfam Wall-associated receptor kinase galacturonan-binding 44 109 IPR025287 GO:0030247
Viun7g03790 647 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Viun7g03790 647 FunFam PR5-like receptor kinase 415 627 - -
Viun7g03790 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Viun7g03790 647 PANTHER RUST RESISTANCE KINASE LR10-RELATED 312 632 IPR045874 GO:0004672
Viun7g03790 647 SMART serkin_6 340 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g03790 647 Pfam Wall-associated receptor kinase C-terminal 181 250 IPR032872 -
Viun7g03790 647 Gene3D Transferase(Phosphotransferase) domain 1 415 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03790 Viun-Chr7 38212075 38215662 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03790 19 645 Receptor kinase-like Gene Family AT5G38260 38.088 7.61e-137 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun7g03790 Pkinase 3.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03790 - - gmx:100778621 857.055