Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03670 ATGGATTCAGTGCCTGATAATGTGTCTAATTCACATCCAATCAAAGATCCACCCACTTTTTCTCCTGATAAAGAGCGTGATGGTCAAGCCTCTGCTGCTTCAGTTTCTGAGCAAGATAATTCGGCGCACGAGACAACTCCTATGTCATCCCCACCAGGCATATCGTCTTGGGCCAAAAGCTTGAAAATTTCTCAGTCATTTTCTCGCTCCCAAGATGACCCATCAGGTGGAAATGTTGAGAAATCAACTTTTGCTCGCTTCACTAGTAATCTGGGATTGAGGTTGTCTCCAAAGTCTCCTGGATCAGATGACAGTTCCAATGAAACTGCTGTACAATCTAATTTGTTTGGAAGCATTACGAAAGGCCTGGTTGACACTTCTAAGAATGCTGTGAAAGCTGTGCAGGTTAAGGCACGCCATGTTGTTTCCCAGAATAAACGCAGATATCAGGAAGGAGGTTTTGATTTAGATATGACATATATCACTGAGAACATCATTGCAATGGGATTCCCTGCTGGTGACATGAGCTCTGGGTTTTTCGGATATGTTGAAGGATTTTACAGAAATCATATGGAAGAAGTGATTAAGTTTTTTGAAACTCACCATAAGGATAAATACAAGGTTTATAATCTTTGTTCCGAGCGGTTGTATGATGCATCATTGTTTGAGGGGAAGGTGGCTAGCTTCCCTTTTGATGACCACAATTGCCCGCCAATTCAACTGGTTATATCCTTCTGTCAAAGTGCTTACTCATGGTTGAAACAAGACATTGAGAATGTTGTAGTTGTCCACTGCAAGGCTGGAATGGCTAGGACAGGGTTGATGATTTCTAGTCTTCTATTATTCTTAAAGTTCTTCCCAACCGCTGAGGAATCGATGGATTACTATAATCAAAAAAGATGCGTTGATGGAAAGGGACTTGTTCTGCCGAGTCAGATTAGGTATGTCAAATATTTTGAACGAGTCTTAACTTACTTCAATGGCGAAAACCCTCCTGCCCGCAGGTGCATGCTTAGGGGATTCCGGCTTCACAGATGCCCTTACTGGATTAGGCCGTCTGTAACTGTCTCAGATCATAGTGGTGTTTTGTTCTCAACCAAAAAGCATCCGAGAACCAAGGATCTTTTGCCAGAAGATTTTTGGTTTAGTGCACCAAAGAAGGGAGTGATGGTATTTGCTTTGCCGGGAGAGCCTGGTCTTACAGAGTTGGCTGGGGACTTCAAAATTCATTTTCATGATCGCCAAGGAGATTTTTACTGTTGGTTGAACACAACTATGACAGAAAATAGAAAAGTATTGAACACCGGTGATCTTGATGGCTTTGACAAGAGAAAATTGCCTTCTCCAGGATTTATGGTCGAGGTTGTGCTCGTGGACCATAATGCCAGTGTAGAAACTTCGCAACCTAAAACTACTACAACGAAATCAGATGAGAGTTCAAGTAACAGTCCTACTGGTCCTGCGCCAGTGGAAAGGAGCACCCCTTCACAGAATGCAGTCAAAGAATCAGAGAGCCATAATAATGATAAAGATGATGTGTTTTCAGATGGCGAGGCAGAACAATCTGCTTCTTCAGCAACCAAGCAAACGAACCCACCTTCTGAAGCAGTTGAAACTGTTAAAAATGATACCAGAGGCTCCGAATCCGACAGAATTTCAAATCAAATTGCAAACTTATCACGTGCAACAGAACAAGTTTCTTTGGGAAACAAGAGTTCCTCCACGTCAATTCATCACGCTAGTGAGCCAAGAAGTAATGTTGACGGTAAAACAGTGTCTAGTATCGAGGTGCCCAGCGCAGAAAGTGAGTTTAAGGCCATGGCTGCAGATGCTTCTGTTTTTACCTTTGGAGATGACGAAGACTACGAAAGTGATTGA 1878 0.4265 MDSVPDNVSNSHPIKDPPTFSPDKERDGQASAASVSEQDNSAHETTPMSSPPGISSWAKSLKISQSFSRSQDDPSGGNVEKSTFARFTSNLGLRLSPKSPGSDDSSNETAVQSNLFGSITKGLVDTSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKDKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLVISFCQSAYSWLKQDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESMDYYNQKRCVDGKGLVLPSQIRYVKYFERVLTYFNGENPPARRCMLRGFRLHRCPYWIRPSVTVSDHSGVLFSTKKHPRTKDLLPEDFWFSAPKKGVMVFALPGEPGLTELAGDFKIHFHDRQGDFYCWLNTTMTENRKVLNTGDLDGFDKRKLPSPGFMVEVVLVDHNASVETSQPKTTTTKSDESSSNSPTGPAPVERSTPSQNAVKESESHNNDKDDVFSDGEAEQSASSATKQTNPPSEAVETVKNDTRGSESDRISNQIANLSRATEQVSLGNKSSSTSIHHASEPRSNVDGKTVSSIEVPSAESEFKAMAADASVFTFGDDEDYESD 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03670 625 SMART PTEN_C2_2 331 459 IPR014020 -
Viun7g03670 625 MobiDBLite consensus disorder prediction 549 593 - -
Viun7g03670 625 MobiDBLite consensus disorder prediction 1 81 - -
Viun7g03670 625 MobiDBLite consensus disorder prediction 503 517 - -
Viun7g03670 625 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 160 328 IPR029021 -
Viun7g03670 625 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 124 594 - -
Viun7g03670 625 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 132 329 - -
Viun7g03670 625 ProSitePatterns Tyrosine specific protein phosphatases active site. 263 273 IPR016130 GO:0016311|GO:0016791
Viun7g03670 625 Gene3D Protein tyrosine phosphatase superfamily 132 329 IPR029021 -
Viun7g03670 625 MobiDBLite consensus disorder prediction 1 16 - -
Viun7g03670 625 MobiDBLite consensus disorder prediction 518 540 - -
Viun7g03670 625 MobiDBLite consensus disorder prediction 31 81 - -
Viun7g03670 625 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 261 300 IPR000387 GO:0016311|GO:0016791
Viun7g03670 625 MobiDBLite consensus disorder prediction 463 593 - -
Viun7g03670 625 CDD PTP_PTEN 157 321 IPR045101 GO:0016791
Viun7g03670 625 ProSiteProfiles Phosphatase tensin-type domain profile. 147 326 IPR029023 -
Viun7g03670 625 MobiDBLite consensus disorder prediction 463 502 - -
Viun7g03670 625 ProSiteProfiles C2 tensin-type domain profile. 333 460 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03670 Viun-Chr7 37608608 37616202 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03670 33 625 Protein tyrosine phosphatase (PTP) family AT3G19420 68.053 0.0 840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03670 K01110 - gmx:100784003 1099.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g03670 7 37608608 37616202 Viun7g03670 7 37608608 37616202 ECH
Viun2g02145 2 29473196 29480849 Viun7g03670 7 37608608 37616202 PCT