Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03629 ATGACTAGTCCAGTTGGAGAATTGACAAGCAATAACAAAAGTACCGCCGGAGAAATGCGTACTGAAAAATCTGAATTGTCTGAAAAAGTACAGTTAGGGACTGAGCATTTACTAAAGGAACAACGGGAGTCTGGCACTGTGTTAACCCGTTCAGTTATCGATGAAAAATCAAATCAAGTTTATGCTAATGCGACAGAGAATTCTGTTATTTTACTGCCTGCACCACCTCAACATTACTCAGAAAAGAATTGTCAAACTGTAGAAGGTTCACACCTGCAACAAAGTACTGATAAAGAAGTTTCTTTACAGTTATCTAACGATAAGCCAGAAAACCCATCCCAACCATTGTCTGAGAATGAACCCGTGGAATCCGTTCCTGCCTCTGCCGAGGATGGCCAACAGCAATCTAGTCCAGCTCAAGCGAATACAAGTTATGTAAATAAATTGTTGGATCCACCTTCTGGAGATGTTGTGACCAATTTTTCAGAAAAAGTGTCTAATAGCCCCACTAATTCGCAATTGAGGCGCAAGGGTAAAAAAAACTCAAAATTATTGAAGAAGACATATATGCTACGATCGGTAGGAAGCAGTGACAGAGCTTTGCGGTCTAAAACAAAAGAAAATCCCAAGACACCTGAACCAAGTAGTAATTTGGTTGATTGTAATAATAATAATAATAATAGCAATGATGGAGGGAAGAGGAAAGCTCGTAAGAAGAAGAGAAAGAGTGGAGAGGTTGGAATTACTGATCAATTCTCCAGAATCAAATCTCGCTTAAAATATTTATTAAACAGAATAGGCTACGAGAAAAGCTTGATTGATGCTTATTCAGGCGAGGGCTGGAAAGGACACAGTATGGAAAAATTGAAGCCTGAGAAAGAACTTCAACGGGCCAAGTCTGAAATTCTTCGACGCAAATTGAACATTAGGGATCTATTTCGAGATTTGGATTCATTGTGTGCTGAAGGAAAGCTACCAGAGTCTTTATTCGATTCTGAGGGAGAGATTGACAGTGAGGATATATTCTGTGCAAAATGCCACTCCAAAGAGTTGAGCTCTAATAATGATATAATTCTCTGTGATGGTGTCTGTGACCGTGGCTTTCACCAGCATTGTTTATATCCTCCATTGTTAACCGAAGACATTCCACCTGGTGACGAGGGTTGGTTATGCCCTGGATGTGATTGCAAAGATGATTGCATGGACCTTATTAATGACTCCTTTGGAACAAGTCTCACTATTAATGACAATTGGGAGAGGGTTTTTCCTGAAGCAGCAGCTGCTGGAAATAATAAGGATGACAACTTCGGACTCCCTTCTGATGATTCTGATGATGATGATTACAATCCTAATGGTCCAGAGGATGTGAAAGGTGAAGGAGACGAATCAAGTTCTGAGGAATCTGACTATGCTTCTGCTTCTGAGAATTTGGAGGGTTCGCATGGGGATCAATACTTGGGCCTTCCATCTGAAGATTCTGATGATGGTGATTATGACCCTGGTGCTCCAGATGCTGACAATAAAGTCAATGAAGAAAGTTCAAGCTCTGACTTCACATCTGACTCTGAGGATCTTGCTGCTGCAATTGTGGATAGCACGTCCCCTGGACAGGATGATGAAATCAGATCTGCATCCTTGGATGATGTTAAGTACTTGAAAAGTTATGTCAAAAAAAGGGGTAAAGCTGGTAAGAAGCTATCTATGGCTGATGAACTGTCGTCTTTACTAGAGCCAGATGCTGGTCAAGAAGGTTCTACACCTGTTTCTGGGAAAAGGAATTTGGAAAGGTTGGACTACAAAAAGCTGTATGATGAGACATACCACAGTGATACTAGTGAGGATGAAGATTGGACAGCGACTGTTACTCCTAGTAGAAAGAAGAAAGGGAATGTGAATCCTGTGTCACCAAATAGAAATGCTTCAAATAATTCCATGCACACTCCTAAGAGGAATGGCCATCAGAATAAATTTGAAAATACAAAAAATTCACCTGCCAAATCACTCAATGGCCTTGTGAAATTTGATTCTAGTGAACAAAAGTCTAGATCTCCAGCTTGTAAAAGACTAGGTGAAGCAGTAGTTCAGAGACTTCACATATCTTTTAAAGAAAATCAGTATCCAGATAGAGCTACTAAAGAAAGCTTGGCACAAGAACTTGGACTTACTTGTCAGCAGGTTGCCAAATGGTTTGACAATACACGATGGAGCTTCCGGCACTCATCACTAATGAAAACCAATTCAGGGAGAAATGAAGGGGGTGAATGTGAATTAATGTCCCCGGAGGTCAGCGGAGAAAAATCAAAAGCCCCAAGCTCTGGAAAAAGAAAGAAATTGTCAGAACACCAACTATCTGAAACGCAGCTAGATATCAATGGCTTGGAAACAAGTTCACCCAATGCTCATCAAACCCAAAGGGGCAAGAGAATGAAGACCAGGAGAAGGAAATGA 2448 0.4073 MTSPVGELTSNNKSTAGEMRTEKSELSEKVQLGTEHLLKEQRESGTVLTRSVIDEKSNQVYANATENSVILLPAPPQHYSEKNCQTVEGSHLQQSTDKEVSLQLSNDKPENPSQPLSENEPVESVPASAEDGQQQSSPAQANTSYVNKLLDPPSGDVVTNFSEKVSNSPTNSQLRRKGKKNSKLLKKTYMLRSVGSSDRALRSKTKENPKTPEPSSNLVDCNNNNNNSNDGGKRKARKKKRKSGEVGITDQFSRIKSRLKYLLNRIGYEKSLIDAYSGEGWKGHSMEKLKPEKELQRAKSEILRRKLNIRDLFRDLDSLCAEGKLPESLFDSEGEIDSEDIFCAKCHSKELSSNNDIILCDGVCDRGFHQHCLYPPLLTEDIPPGDEGWLCPGCDCKDDCMDLINDSFGTSLTINDNWERVFPEAAAAGNNKDDNFGLPSDDSDDDDYNPNGPEDVKGEGDESSSEESDYASASENLEGSHGDQYLGLPSEDSDDGDYDPGAPDADNKVNEESSSSDFTSDSEDLAAAIVDSTSPGQDDEIRSASLDDVKYLKSYVKKRGKAGKKLSMADELSSLLEPDAGQEGSTPVSGKRNLERLDYKKLYDETYHSDTSEDEDWTATVTPSRKKKGNVNPVSPNRNASNNSMHTPKRNGHQNKFENTKNSPAKSLNGLVKFDSSEQKSRSPACKRLGEAVVQRLHISFKENQYPDRATKESLAQELGLTCQQVAKWFDNTRWSFRHSSLMKTNSGRNEGGECELMSPEVSGEKSKAPSSGKRKKLSEHQLSETQLDINGLETSSPNAHQTQRGKRMKTRRRK 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03629 815 CDD PHD_PRHA_like 342 394 IPR045876 -
Viun7g03629 815 Pfam PHD-finger 342 397 IPR019787 -
Viun7g03629 815 MobiDBLite consensus disorder prediction 79 121 - -
Viun7g03629 815 MobiDBLite consensus disorder prediction 657 679 - -
Viun7g03629 815 CDD homeodomain 694 741 IPR001356 GO:0003677
Viun7g03629 815 FunFam Homeobox protein HAT3.1 323 401 - -
Viun7g03629 815 MobiDBLite consensus disorder prediction 575 685 - -
Viun7g03629 815 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 336 399 IPR013083 -
Viun7g03629 815 MobiDBLite consensus disorder prediction 623 650 - -
Viun7g03629 815 Gene3D - 686 752 - -
Viun7g03629 815 MobiDBLite consensus disorder prediction 210 230 - -
Viun7g03629 815 MobiDBLite consensus disorder prediction 18 43 - -
Viun7g03629 815 MobiDBLite consensus disorder prediction 743 815 - -
Viun7g03629 815 MobiDBLite consensus disorder prediction 159 175 - -
Viun7g03629 815 MobiDBLite consensus disorder prediction 508 522 - -
Viun7g03629 815 MobiDBLite consensus disorder prediction 593 622 - -
Viun7g03629 815 SUPERFAMILY FYVE/PHD zinc finger 332 400 IPR011011 -
Viun7g03629 815 MobiDBLite consensus disorder prediction 1 17 - -
Viun7g03629 815 Pfam Homeodomain 693 736 IPR001356 GO:0003677
Viun7g03629 815 MobiDBLite consensus disorder prediction 427 541 - -
Viun7g03629 815 MobiDBLite consensus disorder prediction 768 783 - -
Viun7g03629 815 ProSiteProfiles 'Homeobox' domain profile. 694 740 IPR001356 GO:0003677
Viun7g03629 815 MobiDBLite consensus disorder prediction 784 804 - -
Viun7g03629 815 SMART PHD_3 342 395 IPR001965 -
Viun7g03629 815 FunFam Homeobox protein HAT3.1 682 751 - -
Viun7g03629 815 SUPERFAMILY Homeodomain-like 687 739 IPR009057 -
Viun7g03629 815 ProSiteProfiles Zinc finger PHD-type profile. 340 397 IPR019787 -
Viun7g03629 815 SMART HOX_1 681 744 IPR001356 GO:0003677
Viun7g03629 815 MobiDBLite consensus disorder prediction 128 149 - -
Viun7g03629 815 MobiDBLite consensus disorder prediction 1 45 - -
Viun7g03629 815 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 128 789 - -
Viun7g03629 815 ProSitePatterns Zinc finger PHD-type signature. 343 394 IPR019786 -
Viun7g03629 815 MobiDBLite consensus disorder prediction 72 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03629 Viun-Chr7 37348200 37354794 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03629 194 777 Homeobox Transcription Factor Family AT3G19510 44.304 2.90e-134 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Viun7g03629 PHD 1.6e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03629 - - gmx:100811458 1122.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g03629 7 37348200 37354794 Viun7g03629 7 37348200 37354794 ECH