Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03628 ATGGTTGCCATGAAGGATTCAAACGTGTATGGATATGTGTTGGTCATTCCGTCCGTCTTTGTTAAAAAGTATTTGAAGGAAATGGCAACACAAGATATCCTCCTCCAAGTCTTAGATGGGAGAACTTGGCAAATGACATTAAAGCATGGCAGAATTATCAAGGGATGGAGGGCTTTTGCATCAAATAACGATTTGAATGTTGGGGATGTTTGCATTTTTGAGCTAACCGATAGCCAAACTCCATGTTTTAAAGTGTCAATAATTCCAATTTCACAAGGTAGAGAAGATGTTGACCTTACGAAAATCCGAGGCTTGAAATGTATTAATACTTTTCCCATCAATGCTATGCTAGAAGCAGAAAATTTCGCATCCGAAAATCCCTTTTTCGCCCTCCATATAAGGGCAAATGATAGGGGAGATTGCAGACCGCGTGTACCACTTGATTTTGTGGAACAATACTTCAACAAGAAACAGGTTGTGATGTTACAATTTAGGAATAAATTATGGCGGGTAAAACTGATCGGTGATGTTCCAACAAAGCTGTCTAAAGGTTGGGGCCCATTTGCGAAAGCATGTAAGTTGCAAAATGGAAACGTTTGCGTCTTTGAGTTAATAAACAAAGAAGATTTAGTGTTTGATGTTCATATTTTTAGGGGACAATCTTAG 666 0.3859 MVAMKDSNVYGYVLVIPSVFVKKYLKEMATQDILLQVLDGRTWQMTLKHGRIIKGWRAFASNNDLNVGDVCIFELTDSQTPCFKVSIIPISQGREDVDLTKIRGLKCINTFPINAMLEAENFASENPFFALHIRANDRGDCRPRVPLDFVEQYFNKKQVVMLQFRNKLWRVKLIGDVPTKLSKGWGPFAKACKLQNGNVCVFELINKEDLVFDVHIFRGQS 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03628 221 Pfam B3 DNA binding domain 7 84 IPR003340 GO:0003677
Viun7g03628 221 Pfam B3 DNA binding domain 128 219 IPR003340 GO:0003677
Viun7g03628 221 SUPERFAMILY DNA-binding pseudobarrel domain 3 89 IPR015300 -
Viun7g03628 221 ProSiteProfiles B3 DNA-binding domain profile. 128 220 IPR003340 GO:0003677
Viun7g03628 221 ProSiteProfiles B3 DNA-binding domain profile. 1 91 IPR003340 GO:0003677
Viun7g03628 221 Gene3D - 1 91 IPR015300 -
Viun7g03628 221 Gene3D - 113 220 IPR015300 -
Viun7g03628 221 CDD B3_DNA 4 89 IPR003340 GO:0003677
Viun7g03628 221 CDD B3_DNA 127 218 IPR003340 GO:0003677
Viun7g03628 221 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 2 88 IPR044837 -
Viun7g03628 221 SMART B3_2 128 220 IPR003340 GO:0003677
Viun7g03628 221 SMART B3_2 1 91 IPR003340 GO:0003677
Viun7g03628 221 SUPERFAMILY DNA-binding pseudobarrel domain 124 219 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03628 Viun-Chr7 37336114 37337423 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03628 16 206 REM Transcription Factor Family AT4G31650 23.671 1.00e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun7g03628 B3 3.2e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03628 - - vun:114189663 454.521