Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03608 ATGGGTGATGCACTGAATGAAGTGCAGCACAGGGGTGGTGTACTCGATTCTTCTCCCAAGAGGGACATTGCATTATTTGAAGGAGACAAGGATTTTGAGCCGCACAATGGCATTGAATTTGAATCCCATGAAGCAGCATATTTATTTTATCAGGAATATGCCAAATCTATGGGATTCACTACTTCAATAAAAAACAGCAGACGCTCAAAGAAAACAAAAGAATTTATTGATGCTAAATTTGCATGCTCTAGGTATGGAGTTACGCCTGAGTCTGACGGTGGCAGCAGTCGAAGACCAAGCGTAAAGAAAACAGACTGCAAAGCTTGCATGCACGTGAAGAGAAAGCCAGATGGAAAATGGATCATTCACGAATTTATAAAGGAACATAATCATGAACTTTTACCAGCTTTGGCATATCATTTTCGGATTCATAGAAATGTGAAATTAGCTGAAAAGAATAATATTGATATCTTGCATGCTGTTAGTGAACGCACAAAAAAGATGTATGTTGAAATGTCAAGGCAATCTGGAGGCTGTCAAAACATCGGGTCTTATGTGAGTGATATAAACTATCAGTTTGACAGAGGCCAGTATTTGGCTTTGGAAGAGGGAGATGCCCAAATTATGCTTGAGTATTTTAAGCATGTGCAGAAGGAGAGTCCCAACTTCTTCTATTCTATAGATTTAAATGAAGAGCAGCGCTTAAGAAATCTATTTTGGATTGATGCAAAAAGTATCAATGATTATCTCAGCTTTAATGATGTGGTTTCATTTGATACCACTTACATAAAAAGCAATGACAAGTTGCCGTTTGCACCTTTTGTTGGAGTGAACCACCACTCGCAGCCTATTTTGCTTGGATGTGCATTGGTTGCTGATGAGACTAAACCGACATTTGTTTGGTTAATGAAGACATGGCTTAGAGCTATGGGTGGGCAAGCTCCCAAGGTTATAATCACCGATCAAGACAAAGCCTTGAAGGCAGCTATTGAAGAAGTCTTTCCGAATGTACGTCATTGTTTTTCTCTTTGCCACATACTAGAGAGGATACCAGAAAATCTCTCTTTTGTGATCAAACAACACAACAACTTCTTACAAAAATTTAACAAGTGCATTTTTAAATCATGGACAGATGAACAGTTTGACATGAGATGGTGGAAAATGGTCAGTATATGTGAACTCCAAGATGATATTTGGTTTCAGTCATTGTATGAGGACCGGAAAAAGTGGGTGCCGACTTACATGGGGGATACCTTTTTAGCTGGAATGTCTACACCTCAGCGCTCTGAAAGTACGAGCTCTTTCTTTGACAAATATATTCACAAGAAAATTACCCTTAAGGAGTTTGTAAAACAGTATGGGATAATTCTGCAGAATAGGTATGATGAAGAAGCCATTGCGGATTTTGAATCATTGCACAAGCAGCCAGCACTTAAATCTCCTTCACCTTGGGAAAAGCAAATGTCAACAATTTATACACATGCAATATTTAAGAAATTTCAAGTTGAAGTTCTGGGTGTAGCTGGTTGTCAATCTAGGATAGAGGTTGAAGATGGAACTCTTGCAAAGTTCATAGTTCAAGATTATGAGAAGGATGAAGAGTTTTTGGTAACTTGGAATGAAATGAGCTCAGAGGTCTCTTGCTTTTGTCGATTGTTTGAATATAAAGGTTTCCTCTGCAGGCATGCTTTGAGTGTTCTTCAACGTTGTGGTTGTTCAAGTGTTCCATCTCAGTATATCTTGAAGAGGTGGACGAAAGATGCCAAAATTAAGGAATCAATGGCTGATAGGACAAGAAGGATACAAACTAGGGTGCAGCGATATAATGACTTGTGTAAACGAGCTATCGATTTAAGTGAAGAAGGATCATTATCTGAAGAGAATTACAATGTTGTTTTTCGTGCACTTGTTGACGCCTTGAAGAACTGTGTGCTGGTGAATAATTCCAATAACAACGGTGCAGAAACTAGCAATAATGCCTATGGCCTTCGTGAAGCAGAAGAGAATCAGGGTCCTCTCGCTTTGAAACCAAATAAAAAGAGGAACGCAGCTAGGAAAAGAAAGGCACAATTAGAGCAGGATGTTATACTTGTTAATGCTCAAGATAGCCTGCAGCAAATGGATAATCTCAGCTCGGATGCAATGACCCTTAATGGATATTATGGTACCCAGCAGAATGTGCAAGGACTGGTACAATTGAACTTAATGGAGCCGCCTCATGATGGTTACTATGTTAATCAACAGAGCATGCAAGGCCTGGGTCCTTTGAATTCCATGGCTCCAAGCCATGATGGGTTTTTTGGAACACAGCAAGGAATTCATGGACTGGGAGGGCAATTGGAATTTCGTCCAGCAACTACTTTTGGATATAGCCTTCAGGTTTGCGATGAACCTGATCCCCAGTTTCATGGCAACAGTTCAAGAAATACTTAG 2433 0.397 MGDALNEVQHRGGVLDSSPKRDIALFEGDKDFEPHNGIEFESHEAAYLFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDGGSSRRPSVKKTDCKACMHVKRKPDGKWIIHEFIKEHNHELLPALAYHFRIHRNVKLAEKNNIDILHAVSERTKKMYVEMSRQSGGCQNIGSYVSDINYQFDRGQYLALEEGDAQIMLEYFKHVQKESPNFFYSIDLNEEQRLRNLFWIDAKSINDYLSFNDVVSFDTTYIKSNDKLPFAPFVGVNHHSQPILLGCALVADETKPTFVWLMKTWLRAMGGQAPKVIITDQDKALKAAIEEVFPNVRHCFSLCHILERIPENLSFVIKQHNNFLQKFNKCIFKSWTDEQFDMRWWKMVSICELQDDIWFQSLYEDRKKWVPTYMGDTFLAGMSTPQRSESTSSFFDKYIHKKITLKEFVKQYGIILQNRYDEEAIADFESLHKQPALKSPSPWEKQMSTIYTHAIFKKFQVEVLGVAGCQSRIEVEDGTLAKFIVQDYEKDEEFLVTWNEMSSEVSCFCRLFEYKGFLCRHALSVLQRCGCSSVPSQYILKRWTKDAKIKESMADRTRRIQTRVQRYNDLCKRAIDLSEEGSLSEENYNVVFRALVDALKNCVLVNNSNNNGAETSNNAYGLREAEENQGPLALKPNKKRNAARKRKAQLEQDVILVNAQDSLQQMDNLSSDAMTLNGYYGTQQNVQGLVQLNLMEPPHDGYYVNQQSMQGLGPLNSMAPSHDGFFGTQQGIHGLGGQLEFRPATTFGYSLQVCDEPDPQFHGNSSRNT 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03608 810 Pfam FAR1 DNA-binding domain 49 135 IPR004330 -
Viun7g03608 810 Pfam MULE transposase domain 255 348 IPR018289 -
Viun7g03608 810 ProSiteProfiles Zinc finger SWIM-type profile. 535 571 IPR007527 GO:0008270
Viun7g03608 810 Coils Coil 681 701 - -
Viun7g03608 810 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 27 644 IPR031052 GO:0006355
Viun7g03608 810 Pfam SWIM zinc finger 545 570 IPR007527 GO:0008270
Viun7g03608 810 SMART 26again6 546 573 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03608 Viun-Chr7 37239783 37244676 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Viun7g03608 MULE 2.7e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03608 - - gmx:100805377 1517.29