Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03592 ATGGCTTTGGAGGCTTTGAATTCTCCGACAGCACCCGCGGCTCCCTTTCGTGGCTACCAAGAAGAGGAGGACCTTGACCTTCAGTTCCGCGAGCCTTGGTCTAAAAGGAAACGCTCTAAACGACCGCGTTTCGAGACCGAGGAAGAGTACCTCGCTCTTTGCCTCATCATGCTCGCGCAGAGCGGCAACAACAGTTCCTCCCACCGCCAAACAACTCAACACTCGCCGCCACCATCTCAGAAAGAACCGTCACCGTCACCGCCGCTCAAGTTATCCCACAGATGCACCGTTTGCAACAAGGCCTTTCCTTCTTATCAAGCACTCGGTGGACACAAGGCCAGCCACCGCAAGGCCTCGTCCGAATCTACCTCTGTCTCCGCCGTCGCCAGTGACAGCGTTACCGCTTCCCCTGTCGGCGGTGGAAGGATGCACGAGTGTTCCATCTGTCACAAGAGTTTCCCCACCGGACAGGCCCTGGGTGGTCACAAGCGCTGCCACTACGACGGCGGGAACCACCACAGTAACAGCAACGCCAACGGAAACAACAGCAGCGCCCTCACTTCCTCCTCCGACGGCGTTGGCGGCGGTGCTGCCTCCTCCCACACGCTCCGTGGGATCGACCTGAATCTTCCGGCGCCGCTCACGGAGTTCTGGCCGCCGGTGGGGTTCGACTTCAGGAAGAGAGTCGGCGGAGGCGGCGAGCAAGAGGTGGAAAGCCCGTTGCCAATAACCGCCGCCAAGAAGGCGCGTTTGTTTTCAGGGGAGGACCACGTCGGTGATGATCAAACGGCGTAG 795 0.5987 MALEALNSPTAPAAPFRGYQEEEDLDLQFREPWSKRKRSKRPRFETEEEYLALCLIMLAQSGNNSSSHRQTTQHSPPPSQKEPSPSPPLKLSHRCTVCNKAFPSYQALGGHKASHRKASSESTSVSAVASDSVTASPVGGGRMHECSICHKSFPTGQALGGHKRCHYDGGNHHSNSNANGNNSSALTSSSDGVGGGAASSHTLRGIDLNLPAPLTEFWPPVGFDFRKRVGGGGEQEVESPLPITAAKKARLFSGEDHVGDDQTA 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03592 264 SMART c2h2final6 144 166 IPR013087 -
Viun7g03592 264 SMART c2h2final6 93 115 IPR013087 -
Viun7g03592 264 MobiDBLite consensus disorder prediction 176 196 - -
Viun7g03592 264 MobiDBLite consensus disorder prediction 19 44 - -
Viun7g03592 264 MobiDBLite consensus disorder prediction 112 140 - -
Viun7g03592 264 SUPERFAMILY beta-beta-alpha zinc fingers 93 166 IPR036236 -
Viun7g03592 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 166 IPR013087 -
Viun7g03592 264 MobiDBLite consensus disorder prediction 1 44 - -
Viun7g03592 264 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Viun7g03592 264 ProSitePatterns Zinc finger C2H2 type domain signature. 146 166 IPR013087 -
Viun7g03592 264 Pfam C2H2-type zinc finger 144 168 - -
Viun7g03592 264 Pfam C2H2-type zinc finger 93 117 - -
Viun7g03592 264 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 37 212 IPR044653 GO:0003700
Viun7g03592 264 MobiDBLite consensus disorder prediction 62 77 - -
Viun7g03592 264 MobiDBLite consensus disorder prediction 119 133 - -
Viun7g03592 264 Gene3D Classic Zinc Finger 90 166 - -
Viun7g03592 264 MobiDBLite consensus disorder prediction 62 92 - -
Viun7g03592 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Viun7g03592 264 MobiDBLite consensus disorder prediction 176 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03592 Viun-Chr7 37170228 37171438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03592 1 258 C2H2 Transcription Factor Family AT3G19580 41.924 6.97e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun7g03592 zf-C2H2_6 1.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03592 - - vun:114192483 456.832