Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03589 ATGGCTTCTGCGGTGGCCGCCGCGGCGGGGCTAGAGTTGTCGAATCCTCCATCGGACGGAATAACCAATCTCCGATTTTCAAATCACAGCGATAATCTCTTGGTCTCCTCATGGGACAAGAGTGTGAGATTGTATGATGCGAGCGCCAATGTGTTGAGAGGAGAGTTCAGGCACGCTGGCCCCGTTCTCGATTGTTGCTTCCACGACGATTCCTCCGGTTTCAGTGTCGCCGCCGACAACACTGTTAGACGGCTTTTCTTCAGCTCTAATAAAGAGGATATCCTAGGAAAGCATGATGCGCCTGTTCGTTGTGTTGAGTACTCATATGCTGCAGGGCAATTGATCACTGGTAGTTGGGACAAAACCCTGAAATGCTGGGACCCTAGAGGTGCGAGTGGCCAAGAGCGCACACTCGTTGGGACATATCCACAGCCTGAGCGTGTTTACTCTCTCTCTCTGGTTGGAAATCGCCTGGTTGTAGCAACAGCTGGAAGACATGTTAATATCTATGATTTGAGGAACATGTCTCAACCTGAACAGAAAAGAGAATCTTCATTGAAATATCAAACCAGATGTGTGCGCTGTTACCCAAATGGAACAGGATATGCACTTAGTTCAGTGGAAGGGCGTGTATCGATGGAATTCTTCGACCTCTCAGAAGCTATCCAGGCAAAAAAATATGCTTTCAAGTGTCACAGAAAATCCGAGGCCGGAAGGGACATTGTCTATCCCGTAAATGCAATGGCATACCACCCCATATATGGAACGTTTGCCACAGGTGGTTGTGACGGGTATGTTAACGTGTGGGACGGAAACAATAAGAAAAGGCTATACCAGTACATGAAATATCCTACCAGCATTGCTGCACTGTCGTTTAGCAGAGATGGACGCCTGTTGGCTGTTGCATCAAGTTACACATTCGAAGAAGGACCTAAAAGCAACGAATCAGATGCTATCTTCGTTCGTAGTGTAAACGAGATTGAGGTGAAGCCGAAGCCCAAAGTCTATCCCAATGCTCCAGCGTAA 1026 0.4786 MASAVAAAAGLELSNPPSDGITNLRFSNHSDNLLVSSWDKSVRLYDASANVLRGEFRHAGPVLDCCFHDDSSGFSVAADNTVRRLFFSSNKEDILGKHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNIYDLRNMSQPEQKRESSLKYQTRCVRCYPNGTGYALSSVEGRVSMEFFDLSEAIQAKKYAFKCHRKSEAGRDIVYPVNAMAYHPIYGTFATGGCDGYVNVWDGNNKKRLYQYMKYPTSIAALSFSRDGRLLAVASSYTFEEGPKSNESDAIFVRSVNEIEVKPKPKVYPNAPA 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03589 341 SUPERFAMILY WD40 repeat-like 17 304 IPR036322 GO:0005515
Viun7g03589 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 279 IPR001680 GO:0005515
Viun7g03589 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Viun7g03589 341 PANTHER MRNA EXPORT FACTOR AND BUB3 9 327 - -
Viun7g03589 341 FunFam Mitotic checkpoint protein bub3, putative 6 334 - -
Viun7g03589 341 PRINTS G protein beta WD-40 repeat signature 257 271 IPR020472 -
Viun7g03589 341 PRINTS G protein beta WD-40 repeat signature 33 47 IPR020472 -
Viun7g03589 341 PRINTS G protein beta WD-40 repeat signature 114 128 IPR020472 -
Viun7g03589 341 SMART WD40_4 8 46 IPR001680 GO:0005515
Viun7g03589 341 SMART WD40_4 135 171 IPR001680 GO:0005515
Viun7g03589 341 SMART WD40_4 49 86 IPR001680 GO:0005515
Viun7g03589 341 SMART WD40_4 228 270 IPR001680 GO:0005515
Viun7g03589 341 SMART WD40_4 88 127 IPR001680 GO:0005515
Viun7g03589 341 Pfam WD domain, G-beta repeat 229 270 IPR001680 GO:0005515
Viun7g03589 341 Pfam WD domain, G-beta repeat 20 46 IPR001680 GO:0005515
Viun7g03589 341 Pfam WD domain, G-beta repeat 95 127 IPR001680 GO:0005515
Viun7g03589 341 Gene3D - 6 335 IPR015943 GO:0005515
Viun7g03589 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03589 Viun-Chr7 37151665 37154857 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03589 74 279 Eukaryotic Initiation Factors Gene Family AT2G46280 27.230 7.29e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03589 K02180 - gmx:100808389 656.751