Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03575 ATGGCCAGCTTCGGAGGAACCACACAAAAGTGCATGGCTTGTGACAAAACCGTTTACCTTGTCGACAAGCTAACTGCTGATGGCCGTGTCTACCACAAAGCCTGCTTCAGATGCCACCATTGCCGCAACACCCTTAAGCTCAGCAACTACTGTTCTTTTGAGGGGGTCCTATATTGCAGACCTCATTACGATCAACTTTACAAGCGAACCGGAAGCTTGGACAAAAGCTTCGAGGGAACACCCAAAGTTCAGAAACCAGAGAAACCAATCATCGAAAGTGAGAACTCTAAGGGCATCGCAAACGTCTTCTTGGGAACCAGGGACAAATGTGTGTGCTGCAAAAAGACGGTGTATCCCACTGAGAGGGTAACCGTTAATGGCACACCCTACCATAAGAGCTGCTTCAAATGTACCTATGGAGGTTGCACCATAAGCTCTTCCAACTTCATCACGCACGAGGGAAAACTCTACTGCAAGCACCATCACATTCAACTCTTCAAGGAGAAGGGTAACTACAGTCAGCTTGAGAATGACCAGGTTCCTACTACCACCACCGAATCATCAACATCAACAACATCAACGGAACCCGTTGCTTGA 597 0.4774 MASFGGTTQKCMACDKTVYLVDKLTADGRVYHKACFRCHHCRNTLKLSNYCSFEGVLYCRPHYDQLYKRTGSLDKSFEGTPKVQKPEKPIIESENSKGIANVFLGTRDKCVCCKKTVYPTERVTVNGTPYHKSCFKCTYGGCTISSSNFITHEGKLYCKHHHIQLFKEKGNYSQLENDQVPTTTTESSTSTTSTEPVA 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03575 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Viun7g03575 198 CDD LIM1_SF3 7 69 - -
Viun7g03575 198 Gene3D Cysteine Rich Protein 105 174 - -
Viun7g03575 198 Gene3D Cysteine Rich Protein 6 75 - -
Viun7g03575 198 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Viun7g03575 198 SMART lim_4 10 62 IPR001781 -
Viun7g03575 198 SMART lim_4 109 161 IPR001781 -
Viun7g03575 198 Pfam LIM domain 11 65 IPR001781 -
Viun7g03575 198 Pfam LIM domain 110 165 IPR001781 -
Viun7g03575 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Viun7g03575 198 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Viun7g03575 198 FunFam LIM domain and actin-binding 1 5 75 - -
Viun7g03575 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Viun7g03575 198 PANTHER OS06G0237300 PROTEIN 2 88 - -
Viun7g03575 198 FunFam LIM domain and actin-binding 1 104 174 - -
Viun7g03575 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 36 - -
Viun7g03575 198 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Viun7g03575 198 MobiDBLite consensus disorder prediction 176 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03575 Viun-Chr7 37038574 37039571 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Viun7g03575 LIM 3.4e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03575 K09377 - gmx:100306027 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g03575 7 37038574 37039571 Viun7g03575 7 37038574 37039571 ECH