Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03543 ATGTCTTCAGACACAAAGAAAAGCCGTGGCCGTCAGAAGATCGAGATGAAGAAAATGAGCAACGAGAGCAACCTCCAAGTCACCTTCTCCAAGCGCCGTACCGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCTGTGCTGCCGACGTGGCACTGATTGTTTTCTCCCCCGGAGAGAAGGTCTTTTCCTTCGGTCACCCTAACGTCGACGCCGTCATTGACCGCTACCTGGCGCGGGCCCCGACGCAGGACATGGGCACCATGCAGTTCATCGAGGCTCACCGCCTGGCGAACGTGCGTGACCTGAACGCGCAGCTCACTCAGATCAACGCCCAATTGGAGGCGGGGAGGCAGCGCGGGGAGGAGCTGAATCGTATGAAGAAGGAATCACAGGCCCAGCTATGGTGGGCCCAGCCCATCGAGAAAATGAGCCTGGCCCAGATGGAGCAGTACAAGGCGGCGTTGGAGGAGCTGAAGAAACTGGTTGCGCGTCTTGCTGACATGGCCATGCTTGAGAGTGCAACAAACCAGGGTCGTCATCAGTTTTTTCCCGGGGCTCCTTCCTCTTCCAATCTGGTGCATTACCCACACCCTTCTCCCGTGTTCCCTCAACCGCTGATTCAGTCACCCATGCTTCAGAACTTCATGTTTCCTGATGGGAGCATCGTAGGCCACCAAGGCTTTAATCACATGGAAATGGGAGGATATGCACCTGGACCGGGACCCGCTGGTGCTTTCTTTTGA 747 0.5622 MSSDTKKSRGRQKIEMKKMSNESNLQVTFSKRRTGLFKKASELCTLCAADVALIVFSPGEKVFSFGHPNVDAVIDRYLARAPTQDMGTMQFIEAHRLANVRDLNAQLTQINAQLEAGRQRGEELNRMKKESQAQLWWAQPIEKMSLAQMEQYKAALEELKKLVARLADMAMLESATNQGRHQFFPGAPSSSNLVHYPHPSPVFPQPLIQSPMLQNFMFPDGSIVGHQGFNHMEMGGYAPGPGPAGAFF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03543 248 Gene3D - 21 88 IPR036879 GO:0003677|GO:0046983
Viun7g03543 248 Coils Coil 149 169 - -
Viun7g03543 248 Coils Coil 100 120 - -
Viun7g03543 248 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Viun7g03543 248 FunFam Agamous-like MADS-box protein AGL62 21 86 - -
Viun7g03543 248 MobiDBLite consensus disorder prediction 1 21 - -
Viun7g03543 248 Gene3D - 89 182 - -
Viun7g03543 248 PANTHER MADS BOX PROTEIN 11 165 - -
Viun7g03543 248 MobiDBLite consensus disorder prediction 1 18 - -
Viun7g03543 248 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Viun7g03543 248 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Viun7g03543 248 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Viun7g03543 248 CDD MADS_MEF2_like 10 78 IPR033896 GO:0000977|GO:0045944
Viun7g03543 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Viun7g03543 248 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Viun7g03543 248 SUPERFAMILY SRF-like 10 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03543 Viun-Chr7 36888521 36889568 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03543 5 164 Type I MADS-box Gene Family AT5G60440 57.055 2.97e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Viun7g03543 SRF-TF 8.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03543 - - gmx:100794751 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g03543 7 36888521 36889568 Viun7g03543 7 36888521 36889568 ECH