Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03541 ATGGATTCAGGAGCAAAGAAAAGCCGCGGTCGCCAAAAGATCGAGATGAAGAAAATGAGCAATGAGAGCAACCTCCAAGTCACCTTCTCCAAGCGCCGAAGCGGCCTTTTCAAGAAGGCGAGTGAGCTCTGCACCCTCTGCGGAGCCCATGTGGCGCTGGTGGTGTTCTCGCCGGGCGAGAAGGTGTTCTCCTTCGGCCACCCCAACGTGGACGCCGTGATCGACCGCTTTCTGGGGCGGGCACCGGTGCAGGACTCGGGCACCATGCAGTTCATCGACGCCCACCGCATCTCCAACGTGCGTGACCTGAACAAGCAGCTGACTCAGGTGAACGAACTTCTGGAAACGGAGAGGAAGCGCGGGGAGGAGCTGAGCCGGATGAGGAGGGAGGCGCAGGACCTGATGTGGTGGACCCGCCCCACTGAGGAGCTGAGTGTGGAGCAGATGGAGCAGTACAAGACAGCATTGGAGGAGCTGAAGAAGCACGTTGCCCAGCTTGCTGAGAGGGCAATGCTTCAGAATGCTGTTAACCAGGGTCATCAGTTTTTCCCAGGGGCTTCTTCCTCTGCCAATTTCATGCCTCAGCCACAGCATCAGCATCAGCATCAGCATCAGCTTCAGCCCCAGCTTCAGCTTCAGCCACAGCCTCCTCAGGTGTTCACTGCTCAGACCGTCCCCACCATGCTTCAGAGCTATATGTTCCCTGATGTAACCATCATGCAGCAGCAGCATCACGGGTTCGATAACATGGCCATGGGAGGGTATGGACCTGGACCTGGACCTGGACCTGCTCCTGCTGGTGGTTTTTTCTGA 813 0.5756 MDSGAKKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAHVALVVFSPGEKVFSFGHPNVDAVIDRFLGRAPVQDSGTMQFIDAHRISNVRDLNKQLTQVNELLETERKRGEELSRMRREAQDLMWWTRPTEELSVEQMEQYKTALEELKKHVAQLAERAMLQNAVNQGHQFFPGASSSANFMPQPQHQHQHQHQLQPQLQLQPQPPQVFTAQTVPTMLQSYMFPDVTIMQQQHHGFDNMAMGGYGPGPGPGPAPAGGFF 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03541 270 FunFam Agamous-like MADS-box protein AGL62 21 87 - -
Viun7g03541 270 Gene3D - 21 88 IPR036879 GO:0003677|GO:0046983
Viun7g03541 270 Coils Coil 149 169 - -
Viun7g03541 270 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Viun7g03541 270 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Viun7g03541 270 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Viun7g03541 270 Gene3D - 89 182 - -
Viun7g03541 270 PANTHER MADS BOX PROTEIN 11 166 - -
Viun7g03541 270 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Viun7g03541 270 SUPERFAMILY SRF-like 10 83 IPR036879 GO:0003677|GO:0046983
Viun7g03541 270 MobiDBLite consensus disorder prediction 1 21 - -
Viun7g03541 270 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Viun7g03541 270 MobiDBLite consensus disorder prediction 1 18 - -
Viun7g03541 270 MobiDBLite consensus disorder prediction 191 210 - -
Viun7g03541 270 Coils Coil 97 124 - -
Viun7g03541 270 CDD MADS_MEF2_like 10 78 IPR033896 GO:0000977|GO:0045944
Viun7g03541 270 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03541 Viun-Chr7 36863476 36864633 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03541 5 189 Type I MADS-box Gene Family AT5G60440 58.511 2.66e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Viun7g03541 SRF-TF 2.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03541 - - pvu:PHAVU_007G047900g 440.269