Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03540 ATGTCGAAGAATAAAAAGTCTAGCTTGGGTCGTCAAAAGATCCCAATAGAGAAAATACCGAAGAAGAGTCATTTGCAAGTCACATTCTCCAAACGTCGTTCGGGAGTGTTCAAGAAAGCCAGCGAACTTTGCACCCTCTGTGGCGTAGAGATCGCGATCGTGGTTTTCTCTCCTGCAGACAAAGCCTTCTCTTTTGGCCACCCAGAAGTTGAGTCCCTCATCGATCGCTACACCACGCGGAACCCTCCGCAAGATTCCAGTGCGCACCACCTCGTTGAGGCTCATCGGAATGCGAACGTTCGTGATCTCAACATGCAACTCACTCAGGCTTTTAATCTTCTCGAGGTTGAAAAGAAGCGAGGGGATGATCTGGATCACGTGAGGAAAGCTAGGCAGAGACAATTTTGGTGGGAGAGTCCCATTGATGAGCTTGGATTGCATGAACTGCTCCAGTTAAAGGCCTCCATTGAGGAGCTCAAGAAGAACATAGAAAAACATGCCACCAAATTCATCATTGACCACTCCACTGCTATATCTTCTTCGTCGATTCTTGGACCTAGTAATGGATTTGGTGCACTTGAACAACGGTATGAACCTGATGCTGGGATTGCCATGGCTTCTTCACTTCCTAATGCTCATTATCTCGCCTTTCGAAATGGGTATCTTTGA 669 0.4709 MSKNKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGVFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESLIDRYTTRNPPQDSSAHHLVEAHRNANVRDLNMQLTQAFNLLEVEKKRGDDLDHVRKARQRQFWWESPIDELGLHELLQLKASIEELKKNIEKHATKFIIDHSTAISSSSILGPSNGFGALEQRYEPDAGIAMASSLPNAHYLAFRNGYL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03540 222 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Viun7g03540 222 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Viun7g03540 222 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Viun7g03540 222 Coils Coil 149 169 - -
Viun7g03540 222 Gene3D - 89 175 - -
Viun7g03540 222 PANTHER MADS BOX PROTEIN 11 166 - -
Viun7g03540 222 SUPERFAMILY SRF-like 10 89 IPR036879 GO:0003677|GO:0046983
Viun7g03540 222 Gene3D - 21 88 IPR036879 GO:0003677|GO:0046983
Viun7g03540 222 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Viun7g03540 222 FunFam Agamous-like MADS-box protein AGL62 21 87 - -
Viun7g03540 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Viun7g03540 222 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03540 Viun-Chr7 36848585 36849606 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03540 6 171 Type I MADS-box Gene Family AT5G60440 53.254 3.32e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Viun7g03540 SRF-TF 3.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03540 - - gmx:100793705 381.719