Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03527 ATGGTCATATCTATGGCGGCCATTTCTTCCATGCTTGCTTTTCTTCTCTCTTATCTAATATCTAGAGCCAGCGCCCAGGTTACCCATAGTTACTGTGATAACAGCAAAGGGAACTATACAATCAATAGCACCTATCACAACAATCTCAACACCCTTCTATCCACGCTCTCTTCCCACACACAAATCAACTATGGTTTCTACAACTTCTCATATGGTCAAAACAGTGACAAAGTAAACGCCATTGGGCTGTGCAGAGGAGATGTTAACCCAGACCAGTGCCGCAGGTGCCTCAACGATTCTGCAGCCACGATCACACGGCTTTGTCCAAACCAGAAAGAGGCAATTTTGTGGCTGAAGACCAACGAATGCCAGTTGCGTTATTCTCAGCGCTCAATATTCGGTGTCTTGGAATCTTCTCCTTGGTTCTACATGAAGAACAGTAACAATGTAACGGAACCGGATAAGTTTAACCAAGCACTCTCTAACTTAATGAAGAATCTCACAATCGTGGCTGCATCAGGTGACTCTCGTCGCAAGTATGCTACGGATAGTGTAGTTGCTTCAAATTTTCAAACCATATACGGTCTTGTGCAGTGCACCCCTGATTTGTCCGAGACAGACTGCAATAGATGCTTGGATGGGGCTATCTACGAAATCTCACCGTGTTGTGCCAACAAGAAGGGTGTTAGAGTTGTTCGACCAAGTTGTAATATTAGATTCGAAACTTACAGCTTCTACGATCCAACGCCTAAATTAGACCCTGATGTAAAACCACCATCTGCATCACCACCTTCCTCTTTCAATAGCACTTCTCCCAAAGAGAGCAACAATACAATAACAATTGTCATTGCCGTTGTTGTTCCTACTTTAGTTGCTGCTGTCGTTTCCCTCCTTTGTCTCTGCAGATATTTAAGAAGGAGGAAGGCAAGAAAAAGTCTAGCAGTTAATCAAGATGATGATGACATTGAAATTGCTCAGTCATTGCAATTGGACTTCGACACTATAAGAGTTGCTACAGAAGACTTCTCTGATTCTAATAAACTTGGAGAAGGTGGATTTGGAGCTGTTTACATGGGTAGGCTCCCCAATGAACAGATGATTGCAGTGAAAAGGTTGTCAAGTGGATCCAGCCAAGGAGACACAGAATTTAAGAATGAAGTGCTTTTAGTGGCCAAACTTCAGCACAGAAATTTAGTCAGGCTACTTGGTTTCTGTTTGGAAGGAAGAGAAAGGCTACTCGTCTATGAATTTGTTCCTAACAAAAGCCTTGATTATTTCATATTTGATCCAGCCAAGAAAGCACTGTTGGATTGGGCAATGCGATACAAAATCATAAGAGGTATTGCCCGAGGGCTTCTCTACCTTCACGAAGATTCTCTTCTGCGAATTATACATCGTGATCTCAAAGCAAGCAATATTCTCTTAGACGAAGAGATGAATCCTAAGATAGCAGATTTTGGCATGGCAAGACTGGTTTTACTGGATCAAACTCATGCAAATACAAATAGAGTTGTGGGAACCTATGGATACATGGCACCGGAGTATATAATGCAAGGACAATTTTCGGTGAAGTCAGATATCTTTAGTTTTGGTGTACTGCTTCTTGAGATCGTAAGTGGCCAAAAAAACAGTGACTTTCGTCATGGGGATGATGTGGAGGATCTATTGAGCTTCACATGGAGAAACTGGAGGGATGGAACAGCTGTAAACATTGTAGATCCATCATTGAACAATAATTCAATAAATGAAATGATGAGATGCATTCATATTGGTTTGCTATGTGTTCAAGACAATTTAAGTGACAGACCAAGCATGGCGACCGTTATGCTGATGCTGAGTAGCTATTCTCTGAGTCTTCCCATCCCTTCTGAACCTGCATTTTATGCCCACAGTACAACTAGAAGCCTTCCGGCCACAATGTCATGGGGGCATAGTTCGAGGGCTACAACAAACGAATCAACCAACAAATCTGCACAAGAGTCAGAAAATGAGATTTCAATTACTGAACTGTACCCTCGCTAG 2022 0.4224 MVISMAAISSMLAFLLSYLISRASAQVTHSYCDNSKGNYTINSTYHNNLNTLLSTLSSHTQINYGFYNFSYGQNSDKVNAIGLCRGDVNPDQCRRCLNDSAATITRLCPNQKEAILWLKTNECQLRYSQRSIFGVLESSPWFYMKNSNNVTEPDKFNQALSNLMKNLTIVAASGDSRRKYATDSVVASNFQTIYGLVQCTPDLSETDCNRCLDGAIYEISPCCANKKGVRVVRPSCNIRFETYSFYDPTPKLDPDVKPPSASPPSSFNSTSPKESNNTITIVIAVVVPTLVAAVVSLLCLCRYLRRRKARKSLAVNQDDDDIEIAQSLQLDFDTIRVATEDFSDSNKLGEGGFGAVYMGRLPNEQMIAVKRLSSGSSQGDTEFKNEVLLVAKLQHRNLVRLLGFCLEGRERLLVYEFVPNKSLDYFIFDPAKKALLDWAMRYKIIRGIARGLLYLHEDSLLRIIHRDLKASNILLDEEMNPKIADFGMARLVLLDQTHANTNRVVGTYGYMAPEYIMQGQFSVKSDIFSFGVLLLEIVSGQKNSDFRHGDDVEDLLSFTWRNWRDGTAVNIVDPSLNNNSINEMMRCIHIGLLCVQDNLSDRPSMATVMLMLSSYSLSLPIPSEPAFYAHSTTRSLPATMSWGHSSRATTNESTNKSAQESENEISITELYPR 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03527 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Viun7g03527 673 ProSiteProfiles Protein kinase domain profile. 342 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g03527 673 Pfam Protein tyrosine and serine/threonine kinase 345 609 IPR001245 GO:0004672|GO:0006468
Viun7g03527 673 ProSiteProfiles Gnk2-homologous domain profile. 27 132 IPR002902 -
Viun7g03527 673 Gene3D Phosphorylase Kinase; domain 1 304 417 - -
Viun7g03527 673 SUPERFAMILY Protein kinase-like (PK-like) 331 647 IPR011009 -
Viun7g03527 673 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Viun7g03527 673 CDD STKc_IRAK 348 608 - -
Viun7g03527 673 FunFam Cysteine-rich receptor-like protein kinase 10 141 245 - -
Viun7g03527 673 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 20 671 - -
Viun7g03527 673 MobiDBLite consensus disorder prediction 639 673 - -
Viun7g03527 673 Pfam Salt stress response/antifungal 32 129 IPR002902 -
Viun7g03527 673 Pfam Salt stress response/antifungal 148 243 IPR002902 -
Viun7g03527 673 FunFam cysteine-rich receptor-like protein kinase 10 418 619 - -
Viun7g03527 673 FunFam Cysteine-rich receptor-like protein kinase 10 305 417 - -
Viun7g03527 673 MobiDBLite consensus disorder prediction 251 274 - -
Viun7g03527 673 MobiDBLite consensus disorder prediction 639 666 - -
Viun7g03527 673 Gene3D - 18 131 IPR038408 -
Viun7g03527 673 Gene3D - 139 245 IPR038408 -
Viun7g03527 673 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 12 132 - -
Viun7g03527 673 ProSiteProfiles Gnk2-homologous domain profile. 138 245 IPR002902 -
Viun7g03527 673 SMART serkin_6 342 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g03527 673 Gene3D Transferase(Phosphotransferase) domain 1 418 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03527 Viun-Chr7 36759371 36762563 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03527 36 673 Receptor kinase-like Gene Family AT4G21410 49.317 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun7g03527 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03527 - - var:108324785 1120.92