LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun7g03508	ATGCATCTGCCACCCCATAATTATACCCTTCTTTGTTTCCCTTGTAAAAAAGGCATGGCTTCATTTTACTTCTTCATTTTGCAGCTATCTTTCTTTTCCCTCTTTCTTCATTGCTCTGCTTATAATATCATCCAAGGTGCTACCCATGAAAATCCCAAAGCTTTCTATAACTGTACAAGGAACACCACTTCCGCTTCCTATAGCGTGGCTTACCGTTCTAACGTCAAAACACTCCTAGATTGGCTCTCCTCCAATGCCACTAACCATGACAGATTCTACAACACCACAGTTGCTAGCCAACACAAAGCAGACACTGCCTATGGGAGCTTCTTTTGTATGAGAAACGCCCCTAAACTCTGCCAACAATGCGTCACAGAAGCTGCTAAACTTCTATCATCACTTTGCACCATTGCGCAAGAGGCTATTGTATGGTACGAAGTGTGCTACGTGCGCTACTCTGATCGTTGTTTCTTCTCCACTGTGGAGGATAGTCCTAAACTCTCCTTTGGGAATGATGAGGACTATAAGGGTCAGGTTGAGCGTTTCAACGCTATTGTGTGGGATATGCTGAACGATTTGAGAAATGAGGCAGCAAGTGCTTCTGATAAACGAGCTGATAAGTCTGTGAATATCACAGATAACCAAAACACTTATGGCTGTGCTTGGTGCCTACCATACATGTCCGAAGACAAGTGCAGATGGTGTCTTAGCGTGGCCATAGCAGAGAATCCAACCGGTTGCTGCAGAGGAAAATCTGGGGGATCAGTCATACTTCCTAGTTGTGGTGTTAGATACGAATTATATCCATTCCTTTCGGTACATAGTACTTGGCTGTCTCCTCCACCACTTCTCAACACTCCTCCTCCTTTTGCTTCACCAGGGAAAAGAAAACAGAAGACACTAACAATAGTTGTGACGGTTGTTCCAATTGTTGTTTCACTGGTGCTTTTATCCTTGGGTTGCGTCTGTTTTCTACGAAGGAAAGAAACAAAGAATCGACATGATATTCTCAAAGAAAGCTTTGGGCATGACAGTACCACTTTGGAGTCCTTGCGATTTGAATTAGTCAAAATTGAAGCTGCAACAAATAGATTCGCTAAAGAAAACATGATAGGCAAAGGTGGATTTGGAGAGGTTTATAGGGGTATTCTTTCAGATGGACAAGAAATAGCCGTGAAGAGGCTCACTGGGAGCTCTCGGCAAGGTGCAGTAGAGTTTAAAAATGAGGTTCAAGTTATCGCTAAGCTTCAACATAGAAATTTAGTAAGATTACTAGGATTTTGCTTGGAAGATGATGAAAAGATACTCATTTATGAGTATGTGCCAAACAAGAGTCTTGATTATTTTTTATTAGATATCAAGAAGCGAAGATTACTGTCGTGGTCAGAACGACTGAAGATCATAAGAGGAATTGCACGAGGAATTCTATATCTACACGAAGATTCTTGCTTAAAAATAATTCATCGTGATCTAAAACCCAGCAATGTTTTATTAGACAGTAACATGAACCCAAAAATTTCAGATTTTGGCATGGCTAGAATTGTTGCGGGAGATGAAAATGAAGCAAGTACGGGCAGAATTGTGGGGACATATGGTTACATGTCTCCAGAATATGCGATGCATGGACAATTTTCTGTGAAATCTGATGTATTTAGTTTTGGTGTTATGGTTCTGGAGATTATTAATGGAAAGAGGAAAGGTTGTTTGTCTGAACCAGAGGTTATTGATGACATCCGCAGACATGCTTGGACAAAATGGACAAAGGAAAGAGCACTAGAACTGTTGGATCCTGAGATAGAAGGAGGTTATTGTGGTGAAGAAGTGAAGAAATGTATCCACATTGGTTTGTTGTGTGTTCAAGAAGATCCAAACGATAGGCCTACAATGGCAACAGTTGTGCTTTATCTCAACAACCCTTCAATTAACTTGCCTTCCCCTCATGAACCAGGATATTTTAAGCGTAACAGAGAACAACTCAACATCACCAACGATAAAGAATTGGATAATATCACTGATTCCGTCAACGATATTTCTCTAACTAAATTCTTTCCTCGATAA	2058	0.4077	MHLPPHNYTLLCFPCKKGMASFYFFILQLSFFSLFLHCSAYNIIQGATHENPKAFYNCTRNTTSASYSVAYRSNVKTLLDWLSSNATNHDRFYNTTVASQHKADTAYGSFFCMRNAPKLCQQCVTEAAKLLSSLCTIAQEAIVWYEVCYVRYSDRCFFSTVEDSPKLSFGNDEDYKGQVERFNAIVWDMLNDLRNEAASASDKRADKSVNITDNQNTYGCAWCLPYMSEDKCRWCLSVAIAENPTGCCRGKSGGSVILPSCGVRYELYPFLSVHSTWLSPPPLLNTPPPFASPGKRKQKTLTIVVTVVPIVVSLVLLSLGCVCFLRRKETKNRHDILKESFGHDSTTLESLRFELVKIEAATNRFAKENMIGKGGFGEVYRGILSDGQEIAVKRLTGSSRQGAVEFKNEVQVIAKLQHRNLVRLLGFCLEDDEKILIYEYVPNKSLDYFLLDIKKRRLLSWSERLKIIRGIARGILYLHEDSCLKIIHRDLKPSNVLLDSNMNPKISDFGMARIVAGDENEASTGRIVGTYGYMSPEYAMHGQFSVKSDVFSFGVMVLEIINGKRKGCLSEPEVIDDIRRHAWTKWTKERALELLDPEIEGGYCGEEVKKCIHIGLLCVQEDPNDRPTMATVVLYLNNPSINLPSPHEPGYFKRNREQLNITNDKELDNITDSVNDISLTKFFPR	685

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun7g03508	685	Gene3D	Phosphorylase Kinase; domain 1	326	440	-	-
	Viun7g03508	685	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	486	498	IPR008271	GO:0004672\|GO:0006468
	Viun7g03508	685	SMART	serkin_6	365	641	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun7g03508	685	CDD	STKc_IRAK	371	638	-	-
	Viun7g03508	685	Gene3D	-	168	270	IPR038408	-
	Viun7g03508	685	Gene3D	-	52	157	IPR038408	-
	Viun7g03508	685	Gene3D	Transferase(Phosphotransferase) domain 1	441	643	-	-
	Viun7g03508	685	Pfam	Salt stress response/antifungal	177	268	IPR002902	-
	Viun7g03508	685	Pfam	Salt stress response/antifungal	58	154	IPR002902	-
	Viun7g03508	685	ProSiteProfiles	Protein kinase domain profile.	365	641	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun7g03508	685	ProSiteProfiles	Gnk2-homologous domain profile.	163	270	IPR002902	-
	Viun7g03508	685	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	326	440	-	-
	Viun7g03508	685	FunFam	cysteine-rich receptor-like protein kinase 10	441	643	-	-
	Viun7g03508	685	Coils	Coil	190	210	-	-
	Viun7g03508	685	Pfam	Protein tyrosine and serine/threonine kinase	368	634	IPR001245	GO:0004672\|GO:0006468
	Viun7g03508	685	ProSiteProfiles	Gnk2-homologous domain profile.	53	157	IPR002902	-
	Viun7g03508	685	SUPERFAMILY	Protein kinase-like (PK-like)	348	657	IPR011009	-
	Viun7g03508	685	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	52	676	-	-
	Viun7g03508	685	ProSitePatterns	Protein kinases ATP-binding region signature.	371	393	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun7g03508	Viun-Chr7	36621992	36625135	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun7g03508	25	685	Receptor kinase-like Gene Family	AT4G05200	43.066	0.0	540

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun7g03508		PK_Tyr_Ser-Thr	1.6e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun7g03508	-		-	vun:114191742	1360.51