Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03485 ATGAGTGAAAGGCAACAAATGCAGTATTCTGAGTGTAATCAATTTTCTACTTCAATCACATACAGCCCTAGTAATAGATATCAGCCTGAAATATTAAGAGCTTTAATTTATGCATATGGCAAAGAAGAAAGCCAAGAATGTCCAAGCAGTAAACCACTGTTAGTTGAACAGATGGATAGAAACTGTGTAGACAATAATGTGTGGTCAAAACCATGGCAGAATACAGAAGAGGAGGAGTTTGACTGGGAAGCTTTGAAGTCAAACATAGTACACCATAGTGGAAATAAAAGTTCATTACCTTCAACTGTTGGTTTCTCCAATGAAATTCCTGTTGTTGCAGCTAGTGCAACTTTGTCAGAGCAAAATGGCAGCAAGGGTTGGCCTTCTTCTGGATCTCAGCTTCCTCCACTACATGATTCCTCTGCTATGGCGATTAAGCATAGTCTGGTCTCCTCTCAATTTCATGATGCTATGAAGGTTTCTCAACATCGCTATAACTCGTCTCAACATATCTTTAGTAAAAGTTATGAAAACCCAAATGGGGTTAGACATGCAGGGCCAATAATGGTTTCTGGCATTCCCTCTAATGTGAAACCGCATTCACCAGTTGTGCCTGCTTCTTCTGAAACAACACATTCTCTAAATCAGAATGTCACTCGATCTGCTATTATGAAGCATGCTGTAAATAGCTCTCTGATTGTACCAGCACAGTCAATTGGCGCCTTCGAGAACAAGGATGCAAATGCTACACATATGAATCAGTTTCCTAACAAGCTTCCAGCCCAAGTTTCTTCCGACCAGAAACATCACTGGGAAACACCACACCCCATGTTTTTTCCATCTCAGGATCCATCAACCTCACAGTATAGTCATGGGATGAGTTTTTTGAATACGTTACCTTCACCACTCCCAAGTATTACAAACTACCCTTTTCATCCTCGTGTTTTATCTCAAATGATGATACCTCGTCCAGATGTTGAAGATACCGATTTACATACTTCTCAAATTTCTCATGCTGTCATCTCATCGGATAAACCGCTGCCGCCACAGAATTCTATCGGAACCGAGTTTAAAGCAGGCAATCTGAAGGTTCCGCTTGAGTCTGTAGTGAATTGCTTGTATGCTGATCTCCCGAGACAATGCAGAAGTTGTGGGCTCAGATTCAGAAGCCAAGAGGAACACAGAAGTCACATGGATTGGCACGTTACCAAGAATCGGAGGCAGAGATTGTGTCGTCAATGGTTTGTGAGTTCGAGGATGTGGCTTAGTGGTGCAGAGGCAGTGGGAACAAAGTCAGTTCCAGCTTTTTTTCCGACAGAAACAAAAGAAGAAACGAAAGATGAAGAAGAGTGGGCAGTTCCAGCTGAAGATGAACAGATAGCATGTGCATTGTGCAAAGAGCCTTTTGATAAGTTTTACAGTGATGAAATGGATGACTGGGTGTACAGAGGAGCTGCATACCTGTATCAACCCACAGGAAAATTAGCAACAACCTTGGACAGGTCTGAGTTAGGTCCCATAATTCATGCTAAATGCAGATCACAACCTAGAATGCCTCACTCCCAACATCTTGGAAAGGATGATTATGAAGAGGGTTACTCAAGTAAACGAATGCGGATTTGA 1623 0.4202 MSERQQMQYSECNQFSTSITYSPSNRYQPEILRALIYAYGKEESQECPSSKPLLVEQMDRNCVDNNVWSKPWQNTEEEEFDWEALKSNIVHHSGNKSSLPSTVGFSNEIPVVAASATLSEQNGSKGWPSSGSQLPPLHDSSAMAIKHSLVSSQFHDAMKVSQHRYNSSQHIFSKSYENPNGVRHAGPIMVSGIPSNVKPHSPVVPASSETTHSLNQNVTRSAIMKHAVNSSLIVPAQSIGAFENKDANATHMNQFPNKLPAQVSSDQKHHWETPHPMFFPSQDPSTSQYSHGMSFLNTLPSPLPSITNYPFHPRVLSQMMIPRPDVEDTDLHTSQISHAVISSDKPLPPQNSIGTEFKAGNLKVPLESVVNCLYADLPRQCRSCGLRFRSQEEHRSHMDWHVTKNRRQRLCRQWFVSSRMWLSGAEAVGTKSVPAFFPTETKEETKDEEEWAVPAEDEQIACALCKEPFDKFYSDEMDDWVYRGAAYLYQPTGKLATTLDRSELGPIIHAKCRSQPRMPHSQHLGKDDYEEGYSSKRMRI 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03485 540 ProSitePatterns Zinc finger C2H2 type domain signature. 381 401 IPR013087 -
Viun7g03485 540 MobiDBLite consensus disorder prediction 520 540 - -
Viun7g03485 540 MobiDBLite consensus disorder prediction 515 540 - -
Viun7g03485 540 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 7 520 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03485 Viun-Chr7 36505186 36507311 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03485 33 85 C2H2 Transcription Factor Family AT4G04885 47.170 8.44e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03485 K14400 - gmx:100794796 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g03485 7 36505186 36507311 Viun7g03485 7 36505186 36507311 ECH