Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03484 ATGTTCTCCCAAAATCTGATTCTCCCTCCCGAAAACCCTAGACCAGCGGCGGCTTCGTTCGCTTCAAAACCCATGAGCAATGAGATCGCAATCGCTGCGCAGAAACCTCCACCGTCGATTCTCGTTGGCCGCTTCAAGGCACTCCTCAAGCAGCGTGATGACGAACTCAGACTCGTCGCAGGCGTCCCCGTTCCGCCCCCCACAACAGATGAAATCGTCCAGATTTACGACCTCCTTTTGTCGGAACTCACCTGTAATTTGAAGCCTATCATCACCGATCTCACAATCATCGCCGAACAGCAGAGGGAGCACGCCAAAGGCATCGCTGATACAATTTGCACTCGGATTCTCGAGGTGCCAGCAGATCAAAAGCTCCCCTCACTCTATTTGTTGGACAGTATTGTGAAGAATTTTGGGCAAGAATACATTAAATACTTCTCTTTACGTCTGCCAGAAGTTTTTTGTGAGGCATACAGGCAGGTTCAGCCTAGTTTGCATCCTGCTATGCGGCATCTTTTTGGGACCTGGTCAAAAGTTTTTCCCCCTTCTGTCCTACGCAAGATTGAAGCTGAATTGCAATTTTCCGTAGCAGTTAATACCCAATCATCCACCCTGAATGCTGTAAGGGCTTCTGAATCTCCTCGGCCTAGTCATGGCATACATGTTAATCCCAAATACCTGCGCCAGTTGGATCACTCAACCGTGGATAGTGTTGGTGCTGAAAAGTTGGATTCATCAGGAAATGCCAATAATACAAACTTTGGCATTCTAGGTAGTAAGACACACCAAATTTTGTCAGGCAGTAGCAGGCTGGGAATATCCTCTTCCCCTTCAAGAAGTGGACATGATAGGCATTTGTCTGCACCCATGGATGAGTATGCAGCTGACAGTTCTGCTAACAGATTAATTGAGAGAGACTCTCCTCATCCTGCTGTTGATTATGGAGTAGGCAAGGCAATAGGTAGAGATATGGAGTTGAGTGAATGGCAACGAAAGCAGTATGGTGGTGATGGTCGTAATAGGTTTCCAACTTCTATCACATACAGCCTTAGTAATGGACATCAGCGTCAAAGTCCAAGAGCTTTAATCGATGCATATGGCAGTGACAAAAGTCAAGAAACTTCAAGTACTAAGCCTTTGCTAGTTGAACGGCTTGATAGAAATGGTATAGACAACAAGGTATTGCCTACATCATGGCAGAATACCGAAGAGGAGGAGTTTGATTGGGAAGATATGAGTCCAACCTTGACTGATCATAGTAGGAATAACAGTATATTGGCTTCAACTATTGGATTCACCAGGGAAAGGCCTGTTGTTGCAGCTAATGCCGCTTTGTCAGAGCATGATTCCAGGAAGGGGGTTTGGTCTAGTGGATCTCAGCTTCCTCCAGTGGATGATTCTTCTGCTGTAGCAGAAGATGCATTTGCTTCTTTGGGTTTTCGACGAGCACCACTGGGACAGGTACCTGGATTCCAAAATCATGTCAATCATAGTCTCGGTTCTTCTCATCATCTGTCCAACTCGTCACAACATATCTTTGGTAATAGGGGTCGGGCAAGAACTCTTACATATCCTCCTATTGATAACATTCACAATGCCGATACAAATCCATATCGGGTTCGACCTGCATTATCAAGGATGGTTTCTGGCCGTGTCTCTAATGTAGAACCTAGACCATCAGTTTTGCCTGCAACTCTTGAAATAAGGCCTTCTGTAAATTTGAATGTCACTCGACCACCTGCATTAAATCCAATAAATCCATTACAAAAACATGTTAGGAGTCAGTTTGAATCTTTACATACTAGTAACCCTATTGTGAACCATGTAAATAAATCTTCATTTATGCCAGAGCAATCATTTGACAGTGTTGAGAACAAGGATGCAAGTATTTTGAAGATACATCAGTTGCCTAATCAGCTTCCTGGACTACTTTCGTCCAACCAGCAAAATCTCAGGCAAGCACCACAACTGCAGTTTTTCCCACCATCTCAGGATTCGTCAAACTCACAATTTAGTCATGGGAGTTCTTTGCAGGGACATGGTTCTTCTATAAGTACTGCCATGTCGAATCCGTTACCTGTTATGCCATTCCATTTGCCACTCCAAAATGTTGCAAATAACCCTTTACATTTACAGGGTGGAGTCCGTCCACCTTTACCTCCAGGTCGCCCTCCTGCTCCCTCTCAAATGATACCTCATCCAAATGCTAGTCCATTTATGTCAAGCCAACAGCCAAGTGTTGGATATACGAATTTAATTAGTTCCCTAATGTCTCAAGGTGTAATCTCATTGGCCAACCAGCTGCCTGCACAGGATTCTGTTGGAATTGAGTTCAATCCAGATATTCTGAAGCTTCGTTATGAGTCTGCGGTCAATGCCTTGTATGGTGATCTCCCAAGACAATGCACAACTTGTGGACTCCGATTCAAATGCCAAGAGGAACACAGTAGTCATATGGATTGGCATGTGACAAAGAATCGGATGTCTAAAAGCCGGAAGCAGAAACCCTCTCGGAAGTGGTTTGTGAGTGACAGGATGTGGCTTAGTGGTGCAGAGGCATTGGGAACTGAGTCAGTCCCAGGTTTTTTGCCTACGGAAACCATAGAAGAAAAGATAGATGATGAAGAGTTAGCTGTTCCAGCAGAAGAGGATCAGAATACTTGTGCATTATGTGGAGAGCCTTTCGATGAGTTTTACAGTGATGAAATGGAGGAATGGATGTATAGAGGAGCTGTATACCTCTATGCTCCCACGGGGACAACAGCAGGCATGGACAGGTCACAGTTAGGCCCCATAATTCATGCTAAGTGCAGATCAGAATCTAATATGGCACCATCTGAAGATCTTGGGCCGGATGAAAAGGGTGGTGATGAAGAGGGTACCCAAAGGAAGCGAAGGCGTAGTTGA 2907 0.4496 MFSQNLILPPENPRPAAASFASKPMSNEIAIAAQKPPPSILVGRFKALLKQRDDELRLVAGVPVPPPTTDEIVQIYDLLLSELTCNLKPIITDLTIIAEQQREHAKGIADTICTRILEVPADQKLPSLYLLDSIVKNFGQEYIKYFSLRLPEVFCEAYRQVQPSLHPAMRHLFGTWSKVFPPSVLRKIEAELQFSVAVNTQSSTLNAVRASESPRPSHGIHVNPKYLRQLDHSTVDSVGAEKLDSSGNANNTNFGILGSKTHQILSGSSRLGISSSPSRSGHDRHLSAPMDEYAADSSANRLIERDSPHPAVDYGVGKAIGRDMELSEWQRKQYGGDGRNRFPTSITYSLSNGHQRQSPRALIDAYGSDKSQETSSTKPLLVERLDRNGIDNKVLPTSWQNTEEEEFDWEDMSPTLTDHSRNNSILASTIGFTRERPVVAANAALSEHDSRKGVWSSGSQLPPVDDSSAVAEDAFASLGFRRAPLGQVPGFQNHVNHSLGSSHHLSNSSQHIFGNRGRARTLTYPPIDNIHNADTNPYRVRPALSRMVSGRVSNVEPRPSVLPATLEIRPSVNLNVTRPPALNPINPLQKHVRSQFESLHTSNPIVNHVNKSSFMPEQSFDSVENKDASILKIHQLPNQLPGLLSSNQQNLRQAPQLQFFPPSQDSSNSQFSHGSSLQGHGSSISTAMSNPLPVMPFHLPLQNVANNPLHLQGGVRPPLPPGRPPAPSQMIPHPNASPFMSSQQPSVGYTNLISSLMSQGVISLANQLPAQDSVGIEFNPDILKLRYESAVNALYGDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKSRKQKPSRKWFVSDRMWLSGAEALGTESVPGFLPTETIEEKIDDEELAVPAEEDQNTCALCGEPFDEFYSDEMEEWMYRGAVYLYAPTGTTAGMDRSQLGPIIHAKCRSESNMAPSEDLGPDEKGGDEEGTQRKRRRS 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03484 968 Gene3D - 66 193 IPR008942 -
Viun7g03484 968 SUPERFAMILY ENTH/VHS domain 68 192 IPR008942 -
Viun7g03484 968 ProSitePatterns Zinc finger C2H2 type domain signature. 802 822 IPR013087 -
Viun7g03484 968 MobiDBLite consensus disorder prediction 708 743 - -
Viun7g03484 968 MobiDBLite consensus disorder prediction 937 968 - -
Viun7g03484 968 Pfam CID domain 87 187 IPR006569 -
Viun7g03484 968 SMART 558neu5 71 193 IPR006569 -
Viun7g03484 968 MobiDBLite consensus disorder prediction 714 732 - -
Viun7g03484 968 ProSiteProfiles CID domain profile. 68 196 IPR006569 -
Viun7g03484 968 MobiDBLite consensus disorder prediction 658 687 - -
Viun7g03484 968 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 55 952 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Viun7g03484 968 FunFam polyadenylation and cleavage factor homolog 4 65 193 - -
Viun7g03484 968 CDD CID_Pcf11 76 193 IPR047415 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03484 Viun-Chr7 36494296 36501732 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03484 741 968 C2H2 Transcription Factor Family AT4G04885 68.122 1.85e-101 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03484 K14400 - gmx:100794796 1513.82