Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03478 ATGAAGGTTCGTACTGATGTGAGCTCTGAATACTGGCTCAATGCTAAGTGTGCTTATCCAGACAGGCAATTGTTTGACTGGGGCATGATGAGGCTGCGTCGTCCATTATATGGGGTTGGAGATCCATTTGCAATGGATGCTGATGATCAATTAAGGAAGAAACGGGAGGCTGAGAGACTATCAAGATTAGAAGAAAAGGAGAAAAATCATATAGAGACTAGAACAAGGAAATTTTTTGCAGAAATACTCAACACTGTCCGTGAGTTCCAATTACAAATTCAAGCTTCTTTGAAGAGGAGAAAACAGAGGAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGACAAAGGGCAACTCGGGCAGAGAAATTGAGGTTCCAAGCCTTGAAGGCTGATGATCAAGAAGCATACATGAGAATGGTGAAAGAGAGTAAGAATGAGAGGTTAACTTTGCTTCTTGAAGAAACGAATAAACTACTAGTAAATTTAGGAGCAGCTGTTCAACGTCAAAAGGACAAAAAGTATTCAGATGGTATTGAGCCATTGGAAGATTCTGAAGCAGATTTACCAGAGTCAGAAAAGAATGGAATTTCTAAGGAGTCACCTATTGATGAAGATATTGATGTGATCGATTCTGATCATAATGGTGATTCGAGTGATTTACTTGAAGGTCAGCGGCAATATAATTCTGCCATACATTCAATTCAAGAAAAGGTGACTGAGCAACCCTCTATTCTTCAAGGTGGAGAGTTAAGACCATACCAGATAGAGGGGCTCCAATGGATGCTTTCTTTGTTCAATAACAATTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGGAAGACGATACAAACAATTTCACTTATAGCATATCTTATGGAAAACAAGGGTGTTACTGGGCCCCACTTGATTGTTGCTCCAAAGGCAGTTCTGCCAAATTGGGTTAATGAATTCACAACATGGGTTCCTAGCATCACAGCTATTCTTTATGACGGACGGCTGGATGAGAGGAAGGCAATGAAGGAAGAGTTGTCAGGGGAGGGGAAATTCAATGTTTTATTAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATTCAATGGAAGTACTTGATTGTTGATGAAGGGCACCGGTTGAAAAACCACGAGTCTGCTCTGGCAAGAACCTTAGACAATGGTTATCACATCCAACGAAGACTTCTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAGTTGTGGTCTTTGCTTAATTTTCTCCTTCCAAACATTTTTAACTCAGTTCAAAATTTCGAGGACTGGTTTAATGCCCCCTTCGCAGACCGAGTTGATGTCTCCCTCACAGATGAGGAACAACTATTGATTATCCGGCGTCTGCATCAAGTAATAAGGCCCTTCATATTAAGACGGAAAAAAGATGAGGTGGAAAAATTTCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTTACTGATGTAGGCAGAGTTGGGTTGGACAACGGTTCTGGAAAATCAAAAAGTCTACAAAACTTAACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTATTCGTGGGAGATTATGATATGTATAAACGTAAGGAGGAGATTGTTAGAGCATCAGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACAGAGTCCTCCTTTTCTCGCAAATGACTCGACTTATGGACGTTCTTGAAATCTATTTACGACTTCATGATTTTAAGTATCTTAGACTAGATGGTTCAACAAAAACTGAGGAAAGAGGCAATCTTCTAAGGAAATTTAATGCTCCTGACTCCCCATACTTTATGTTTCTCTTGAGCACACGTGCTGGAGGTCTTGGTTTGAACTTACAAACAGCAGATACTGTTATAATCTTTGATAGCGATTGGAATCCACAAATGGATCAACAAGCCGAGGACCGAGCACATCGCATTGGACAAAAAAAGGAAGTTAGGGTTTTTGTTTTGGTTAGTGTAGGATCAATCGAGGAGGTGATTCTAGAGCGTGCAAAACAAAAAATGGGCATTGATGCCAAAGTTATCCAAGCAGGACTTTTTAACACAACTTCGACAGCCCAGGACAGAAGAGAAATGTTAGAAGAGATTATGCGCAGAGGTACAAGCTCACTTGGGACAGATGTTCCGAGTGAGAGAGAAATTAACCGCCTTGCAGCTCGTTCTGATGAGGAGTTTTGGCTGTTTGAGAAAATGGATGAAGAGAGAAGACAAAAGGAAAATTACAGATCCCGTCTCATGGAAGAGCACGAATTGCCAGATTGGGTATATTCTCCGATTAACAAGGATGATAAGTCCAAAGATTTCAACAGTGCTGTCACTGGAAAACGGAAAAGAAAAGAAGTGGTATACGCAGATACATTGAGTGATCTGCAGTGGATGAAGGCTGTGGAGAACGGAGAAGACATATCAAAGTTTTCAGCTAAAGGAAAAAGAAGAGACCACCACCTCTCATCTGACAGCACTGCTCAAGCCAGCGATAACACGGTAGCAGAAGAAAGTTTACAGTTGAGGACTGAAAGTGTTCCGATGGCAAACGATCGCACGAGTGAAGATAGTTTCCATGTGGCCCCTTCTTCAAAGAGATTCAAATCTGAAGGAACAAATTTCCTGAAACATACATACGAGGATGTTGGAAGTGGTTTGAACCACCATATGTTATCATGGAATACTCACAAAAAGAAGAGGTCAAGTTTTCTGGGCCAGGGTTCATTATCTGATGCCAGAGGGCATTCTTCAAATGGAAGAGCAAACTGGAACTGA 2865 0.4112 MKVRTDVSSEYWLNAKCAYPDRQLFDWGMMRLRRPLYGVGDPFAMDADDQLRKKREAERLSRLEEKEKNHIETRTRKFFAEILNTVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDKKYSDGIEPLEDSEADLPESEKNGISKESPIDEDIDVIDSDHNGDSSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMENKGVTGPHLIVAPKAVLPNWVNEFTTWVPSITAILYDGRLDERKAMKEELSGEGKFNVLLTHYDLIMRDKAFLKKIQWKYLIVDEGHRLKNHESALARTLDNGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYKRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGNLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYSPINKDDKSKDFNSAVTGKRKRKEVVYADTLSDLQWMKAVENGEDISKFSAKGKRRDHHLSSDSTAQASDNTVAEESLQLRTESVPMANDRTSEDSFHVAPSSKRFKSEGTNFLKHTYEDVGSGLNHHMLSWNTHKKKRSSFLGQGSLSDARGHSSNGRANWN 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03478 954 CDD SF2_C_SNF 551 686 - -
Viun7g03478 954 Gene3D - 482 782 IPR027417 -
Viun7g03478 954 MobiDBLite consensus disorder prediction 855 882 - -
Viun7g03478 954 MobiDBLite consensus disorder prediction 841 894 - -
Viun7g03478 954 SMART SnAC_2 768 828 IPR029295 GO:0042393
Viun7g03478 954 SMART helicmild6 591 675 IPR001650 -
Viun7g03478 954 MobiDBLite consensus disorder prediction 188 220 - -
Viun7g03478 954 Coils Coil 53 73 - -
Viun7g03478 954 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 565 732 IPR001650 -
Viun7g03478 954 FunFam Probable ATP-dependent DNA helicase CHR12 482 781 - -
Viun7g03478 954 Gene3D - 220 475 IPR038718 -
Viun7g03478 954 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 476 IPR027417 -
Viun7g03478 954 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 729 IPR027417 -
Viun7g03478 954 SMART ultradead3 247 440 IPR014001 -
Viun7g03478 954 MobiDBLite consensus disorder prediction 934 954 - -
Viun7g03478 954 Pfam SNF2-related domain 254 542 IPR000330 GO:0005524|GO:0140658
Viun7g03478 954 PANTHER SNF2/RAD54 HELICASE FAMILY 49 853 - -
Viun7g03478 954 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 263 429 IPR014001 -
Viun7g03478 954 MobiDBLite consensus disorder prediction 172 221 - -
Viun7g03478 954 FunFam Chromatin structure-remodeling complex protein SYD 242 485 - -
Viun7g03478 954 Pfam Snf2-ATP coupling, chromatin remodelling complex 769 828 IPR029295 GO:0042393
Viun7g03478 954 Pfam Helicase conserved C-terminal domain 562 675 IPR001650 -
Viun7g03478 954 Coils Coil 766 786 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03478 Viun-Chr7 36417459 36426221 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03478 558 703 RAD5 or RAD16-like Gene Family AT5G43530 37.333 4.50e-21 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun7g03478 SNF2_N 1.8e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03478 - - gmx:100786280 1825.83