Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03477 ATGGAGAAGGAGAAGGAGAAGCAGAATGGGCGCCACCACGCCAAGACACTCATCTGTGCCCTCAACCTTCTCTCGCGCGACCTCCCTCTCCCTCCTCACATCCTCAATTCCGTCTCTTCCATCTACCGCAATCATGATGATGGAGGTAATTCTGGAGAGGACTTGATATCGGATCTTGAAGATGCACTGTCGAAGCAGCGTCCCAACTGTGTGTCTGGTTTTAAACTGGAGAAAGCAAGGGAAAGTCGGTATCGGAGTCAGATTCAGCATCGGTTGAATGATCTTCAAGAATTGCCTTCAAGCAAGGGAGAGGACCTGCAGACAAAATGCTTGCTTGAACTTTATGGACTAAAGCTTGCAGAGCTGCAGATGAAGGTTCGTACTGATGTGAGCTCTGAATACTGGCTCAATGCTAAGTGTGCTTATCCAGACAGGCAATTGTTTGACTGGGGCATGATGAGGCTGCGTCGTCCATTATATGGGGTTGGAGATCCATTTGCAATGGATGCTGATGATCAATTAAGGAAGAAACGGGAGGCTGAGAGACTATCAAGATTAGAAGAAAAGGAGAAAAATCATATAGAGACTAGAACAAGGAAATTTTTTGCAGAAATACTCAACACTGTCCGTGAGTTCCAATTACAAATTCAAGCTTCTTTGAAGAGGAGAAAACAGAGGAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGACAAAGGGCAACTCGGGCAGAGAAATTGAGGTTCCAAGCCTTGAAGGCTGATGATCAAGAAGCATACATGAGAATGGTGAAAGAGAGTAAGAATGAGAGGTTAACTTTGCTTCTTGAAGAAACGAATAAACTACTAGTAAATTTAGGAGCAGCTGTTCAACGTCAAAAGGACAAAAAGTATTCAGATGGTATTGAGCCATTGGAAGATTCTGAAGCAGATTTACCAGAGTCAGAAAAGAATGGAATTTCTAAGGAGTCACCTATTGATGAAGATATTGATGTGATCGATTCTGATCATAATGGTGATTCGAGTGATTTACTTGAAGGTCAGCGGCAATATAATTCTGCCATACATTCAATTCAAGAAAAGGTGACTGAGCAACCCTCTATTCTTCAAGGTGGAGAGTTAAGACCATACCAGATAGAGGGGCTCCAATGGATGCTTTCTTTGTTCAATAACAATTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGGAAGACGATACAAACAATTTCACTTATAGCATATCTTATGGAAAACAAGGGTGTTACTGGGCCCCACTTGATTGTTGCTCCAAAGGCAGTTCTGCCAAATTGGGTTAATGAATTCACAACATGGGTTCCTAGCATCACAGCTATTCTTTATGACGGACGGCTGGATGAGAGGAAGGCAATGAAGGAAGAGTTGTCAGGGGAGGGGAAATTCAATGTTTTATTAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATTCAATGGAAGTACTTGATTGTTGATGAAGGGCACCGGTTGAAAAACCACGAGTCTGCTCTGGCAAGAACCTTAGACAATGGTTATCACATCCAACGAAGACTTCTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAGTTGTGGTCTTTGCTTAATTTTCTCCTTCCAAACATTTTTAACTCAGTTCAAAATTTCGAGGACTGGTTTAATGCCCCCTTCGCAGACCGAGTTGATGTCTCCCTCACAGATGAGGAACAACTATTGATTATCCGGCGTCTGCATCAAGTAATAAGGCCCTTCATATTAAGACGGAAAAAAGATGAGGTGGAAAAATTTCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTTACTGATGTAGGCAGAGTTGGGTTGGACAACGGTTCTGGAAAATCAAAAAGTCTACAAAACTTAACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTATTCGTGGGAGATTATGATATGTATAAACGTAAGGAGGAGATTGTTAGAGCATCAGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACAGAGTCCTCCTTTTCTCGCAAATGACTCGACTTATGGACGTTCTTGAAATCTATTTACGACTTCATGATTTTAAGTATCTTAGACTAGATGGTTCAACAAAAACTGAGGAAAGAGGCAATCTTCTAAGGAAATTTAATGCTCCTGACTCCCCATACTTTATGTTTCTCTTGAGCACACGTGCTGGAGGTCTTGGTTTGAACTTACAAACAGCAGATACTGTTATAATCTTTGATAGCGATTGGAATCCACAAATGGATCAACAAGCCGAGGACCGAGCACATCGCATTGGACAAAAAAAGGAAGTTAGGGTTTTTGTTTTGGTTAGTGTAGGATCAATCGAGGAGGTGATTCTAGAGCGTGCAAAACAAAAAATGGGCATTGATGCCAAAGTTATCCAAGCAGGACTTTTTAACACAACTTCGACAGCCCAGGACAGAAGAGAAATGTTAGAAGAGATTATGCGCAGAGGTACAAGCTCACTTGGGACAGATGTTCCGAGTGAGAGAGAAATTAACCGCCTTGCAGCTCGTTCTGATGAGGAGTTTTGGCTGTTTGAGAAAATGGATGAAGAGAGAAGACAAAAGGAAAATTACAGATCCCGTCTCATGGAAGAGCACGAATTGCCAGATTGGGTATATTCTCCGATTAACAAGGATGATAAGTCCAAAGATTTCAACAGTGCTGTCACTGGAAAACGGAAAAGAAAAGAAGTGGTATACGCAGATACATTGAGTGATCTGCAGTGGATGAAGGCTGTGGAGAACGGAGAAGACATATCAAAGTTTTCAGCTAAAGGAAAAAGAAGAGACCACCACCTCTCATCTGACAGCACTGCTCAAGCCAGCGATAACACGGTAGCAGAAGAAAGTTTACAGTTGAGGACTGAAAGTGTTCCGATGGCAAACGATCGCACGAGTGAAGATAGTTTCCATGTGGCCCCTTCTTCAAAGAGATTCAAATCTGAAGGAACAAATTTCCTGAAACATACATACGAGGATGTTGGAAGTGGTTTGAACCACCATATGTTATCATGGAATACTCACAAAAAGAAGAGGTCAAGTTTTCTGGGCCAGGGTTCATTATCTGATGCCAGAGGGCATTCTTCAAATGGAAGAGCAAACTGGAACTGA 3234 0.4208 MEKEKEKQNGRHHAKTLICALNLLSRDLPLPPHILNSVSSIYRNHDDGGNSGEDLISDLEDALSKQRPNCVSGFKLEKARESRYRSQIQHRLNDLQELPSSKGEDLQTKCLLELYGLKLAELQMKVRTDVSSEYWLNAKCAYPDRQLFDWGMMRLRRPLYGVGDPFAMDADDQLRKKREAERLSRLEEKEKNHIETRTRKFFAEILNTVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDKKYSDGIEPLEDSEADLPESEKNGISKESPIDEDIDVIDSDHNGDSSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMENKGVTGPHLIVAPKAVLPNWVNEFTTWVPSITAILYDGRLDERKAMKEELSGEGKFNVLLTHYDLIMRDKAFLKKIQWKYLIVDEGHRLKNHESALARTLDNGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYKRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGNLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYSPINKDDKSKDFNSAVTGKRKRKEVVYADTLSDLQWMKAVENGEDISKFSAKGKRRDHHLSSDSTAQASDNTVAEESLQLRTESVPMANDRTSEDSFHVAPSSKRFKSEGTNFLKHTYEDVGSGLNHHMLSWNTHKKKRSSFLGQGSLSDARGHSSNGRANWN 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03477 1077 SMART SnAC_2 891 951 IPR029295 GO:0042393
Viun7g03477 1077 MobiDBLite consensus disorder prediction 1057 1077 - -
Viun7g03477 1077 Coils Coil 889 909 - -
Viun7g03477 1077 Pfam Helicase conserved C-terminal domain 685 798 IPR001650 -
Viun7g03477 1077 SMART helicmild6 714 798 IPR001650 -
Viun7g03477 1077 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 688 855 IPR001650 -
Viun7g03477 1077 FunFam Probable ATP-dependent DNA helicase CHR12 605 904 - -
Viun7g03477 1077 PANTHER SNF2/RAD54 HELICASE FAMILY 116 975 - -
Viun7g03477 1077 Pfam SNF2-related domain 377 665 IPR000330 GO:0005524|GO:0140658
Viun7g03477 1077 MobiDBLite consensus disorder prediction 978 1005 - -
Viun7g03477 1077 Gene3D - 343 598 IPR038718 -
Viun7g03477 1077 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 386 552 IPR014001 -
Viun7g03477 1077 SMART ultradead3 370 563 IPR014001 -
Viun7g03477 1077 MobiDBLite consensus disorder prediction 964 1017 - -
Viun7g03477 1077 Coils Coil 176 196 - -
Viun7g03477 1077 Gene3D - 605 905 IPR027417 -
Viun7g03477 1077 CDD SF2_C_SNF 674 809 - -
Viun7g03477 1077 MobiDBLite consensus disorder prediction 311 343 - -
Viun7g03477 1077 Pfam Snf2-ATP coupling, chromatin remodelling complex 892 951 IPR029295 GO:0042393
Viun7g03477 1077 MobiDBLite consensus disorder prediction 295 343 - -
Viun7g03477 1077 FunFam Chromatin structure-remodeling complex protein SYD 365 608 - -
Viun7g03477 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 599 IPR027417 -
Viun7g03477 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 601 852 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03477 Viun-Chr7 36417459 36428255 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03477 681 826 RAD5 or RAD16-like Gene Family AT5G43530 37.333 4.18e-21 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun7g03477 SNF2_N 2.2e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03477 - - gmx:100786280 2019.97