LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun7g03402	ATGGATTCAGAAAGTGGGGTTTCACCTAAGATGCAATTGGAATCTGGAGTTTTGAGTTCAAAGATGAGTAGTGAAAATGTTAGCAGCAACAAAAATATGATATTTAGAGCAGATAAAATTGATTTGAAGAGGTTGGATGCCATGCTAGAAAAACACTTGAGCAAGCTTTTTTCCAAAAGCGTTGCAGCAGAAAGGCCTAAAGAAGCATGGGAGATTGATACGGCCAAATTGGATATACATTATTCTGTAGCTAATGGGAGCTATGGTACTGTCTACAGAGGCACTTATGATGGTCAAGATGTTGCAGTGAAAGTTCTGGACTGGGGTGAAGATGGTATTACCCCTGCTACTAAAATTGCTTCATTAAGGACATCATTTTGGCAGGAGGTTAGCGTATGGCAAAAGCTTGATCATCCAAATGTTACAAAATTTCTTGGAGCTTCACTGGCTATTCCAAATCTCATGATTCCCTCATCAACCATTTGTCCAAATTCTGTTCCTTCCAAGACGGGTTGTGTAATTGCCGAGTTTCTTACTGGCGGAACATTGAAACAATACTTGTTCAGAAATAGGCTCAACAAACTTCCATACCAGATTGTGATTAAGCTGGCTTTGGACCTCGCTAGAGGTCTTTCTTATCTACATTCAAAGAAAATTGTTCACCGAGACATAAAACCTGATAACATGTTGTTAGATGCTAATAGAAATTTGAAAATAGCTGATTTTGGAGTGGCTCGTATTGAAGCTAACAACCAAAGTGAGATGACAAGTGAAACTGGAACCTATGGATATATGGCCCCAGAGGTTTTAAATGGCAAGCCTTACAACAGAAAATGTGATGTCTACAGTTTTGGTATTTGCTTGTCTGAAATTTATAGTTGTACTACGTTTTCCAATCTAACCCTTACCACGGTGTCATGTTCCCTTATTAATAAGCGTTTACGACCTAAAATTCCAAAAAATTGTCCAAGCGACTTTGCAAACATCATACGAAAATGCTGGAATGCAAACCCAGAGAGACGACCAGAAATGCATGAGGTGGTGACAATGTTGGAAGCAATCGACACAAGAAAAGGAGGTACAATGCTTCGTCCTGACCGAAAACAATGA	1110	0.3928	MDSESGVSPKMQLESGVLSSKMSSENVSSNKNMIFRADKIDLKRLDAMLEKHLSKLFSKSVAAERPKEAWEIDTAKLDIHYSVANGSYGTVYRGTYDGQDVAVKVLDWGEDGITPATKIASLRTSFWQEVSVWQKLDHPNVTKFLGASLAIPNLMIPSSTICPNSVPSKTGCVIAEFLTGGTLKQYLFRNRLNKLPYQIVIKLALDLARGLSYLHSKKIVHRDIKPDNMLLDANRNLKIADFGVARIEANNQSEMTSETGTYGYMAPEVLNGKPYNRKCDVYSFGICLSEIYSCTTFSNLTLTTVSCSLINKRLRPKIPKNCPSDFANIIRKCWNANPERRPEMHEVVTMLEAIDTRKGGTMLRPDRKQ	369

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun7g03402	369	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	59	354	-	-
	Viun7g03402	369	Gene3D	Phosphorylase Kinase; domain 1	66	160	-	-
	Viun7g03402	369	ProSiteProfiles	Protein kinase domain profile.	77	354	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun7g03402	369	Gene3D	Transferase(Phosphotransferase) domain 1	171	364	-	-
	Viun7g03402	369	CDD	STKc_MAP3K-like	86	351	-	-
	Viun7g03402	369	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	219	231	IPR008271	GO:0004672\|GO:0006468
	Viun7g03402	369	FunFam	Kinase suppressor of Ras 1	66	161	-	-
	Viun7g03402	369	MobiDBLite	consensus disorder prediction	1	24	-	-
	Viun7g03402	369	Pfam	Protein tyrosine and serine/threonine kinase	80	351	IPR001245	GO:0004672\|GO:0006468
	Viun7g03402	369	SMART	serkin_6	77	354	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun7g03402	369	PRINTS	Tyrosine kinase catalytic domain signature	279	301	IPR001245	GO:0004672\|GO:0006468
	Viun7g03402	369	PRINTS	Tyrosine kinase catalytic domain signature	175	188	IPR001245	GO:0004672\|GO:0006468
	Viun7g03402	369	PRINTS	Tyrosine kinase catalytic domain signature	213	231	IPR001245	GO:0004672\|GO:0006468
	Viun7g03402	369	PRINTS	Tyrosine kinase catalytic domain signature	322	344	IPR001245	GO:0004672\|GO:0006468
	Viun7g03402	369	SUPERFAMILY	Protein kinase-like (PK-like)	63	351	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun7g03402	Viun-Chr7	35837475	35847347	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun7g03402	28	368	MAP Kinase Kinase Kinase	AT3G22750	61.808	1.41e-164	463

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Viun7g03402		PK_Tyr_Ser-Thr	3.3e-54	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun7g03402	-		-	gmx:100807899	533.487