Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03401 ATGGACACGCCAGATAGGAGCAAGATCAACACCCCTCTTTCTCAGTTTGAGGATTCACCTGTATTTAACTATATCAGTAATTTATCTCCTATAGAGCCTGTTAAATCTGTTCACATTACCCAGACCTTCAATTCGCTTAGCTTCTCATCTCCTCCATCTGTTTTCACATCACCCCATGTCAATTGTCACAGAGAATCCAGATTCCTCAGAAGGCATAACCTTTTGGATGCATCCAAAGCTAAGGGTTCATCTGAAGATATAAACAATGTTTATTCACGCGAAAAGACTCTCGCAGATTCAACTCAACTATGTCATGAATCAAGTGAGCCACAGGAAAATACCAATCCAAATATTTCCGTAAGAGATGCCTCAAACGAGCCACGTGATGAAAACCCAAATATCTCTATTGAGGTCCCACAAGGCTTGAAATATAATTTGGCTAGCCCAGGGTATGAACCTGTGATCTGTGCTGATGAGGCTGACTCTCTTTTGGAACTGCCGGGCAAACCAGGATCAGATGTTGCTTATGTTCCAGATGACTCTGAAAAGGATTCAATTGAGGGTGAAATGCATATTCCAGGTTTATGTCAAAATGAGGAAAAAGTTGAAGGACCAGATTGTGGTGTGGATGATTTAATTGCTGAAGCCTCTGATCTGTTAATGTTTAGTCCCCCAAATATGACAGAAGCTTTGAAGGATATAAATAAACAATTAAGTCCTTCAACAAAGCTTACCAATTTTAGGACTTTGTTAGGACAATCTGCCACTAATGAGGGTCAACAAATGCACATTGTTGACACAGTTGCTTCTGGTTCAGAACATGAAATTGAAAATCATCCTTGTGAATCAGGAGCAGCCACAGACACAGTTCAGAGACAAGACAATCATACCAATGTTGCTTTGGTGGCTAACAATCCAATGGAGAAAGTGGATGATAAGCTTGTTTATGTGACACACCGTGGTATACGTAGACGCTGTTTAGATTTTGAGATGGCCAGTGTGCAAAGGAAGAACCTAGATGGTAAATCAAACACCAATTCCAGTACAGAAAAATCTGATGAGATGGATGTTAGTAAAGGAAAGCAATTGGTCCCCATTAAACATAGTGGGGATTCACGGAAGTGTGTTTTGCCTGGAATTGGTTTGCACTTGAATGCACTTGCAAGCTTAAACGATTGCAAAAACATAAAAATTGAGACATTGATATCTGGAAGGCAAACTAACCTTCCCAGCTCCTCCTCATCCTTGCAACTTTCTGCTAGCCAAGATCATCAACTATCATTGGTACCTATATCAGTGGAGAAAGATTTGGAGCCATCAGAGAATGAAGTTCAGCCTGGTGAAGATTGTACCCAGCCTTTGGTTCACATGGCCGGTGAAGATTTGCAGCAGAATAGTCCAAAAAAGAAAAGGCGCAGGTTAGAACCAGATGGGGAAGGGGAGTCTTGCAAACGTTGCAATTGTAAGAAATCAAAGTGTTTGAAGCTTTATTGTGAGTGCTTTGCTGCTGGAGTCTACTGCATAGAGCCCTGTTCATGTCGTGATTGCTTTAACAAACCTATTCATGTTGATACCGTCCTTCAAACTCGCCAGCAGATTGAGTCTCGAAATCCACTTGCTTTTGCTCCTAAAGTCATACGGAGTTCTGATTCTGTACCTGAAATTGGGGATGACCCTAACAAAACTCCAGCTTCTGCCCGACACAAAAGAGGATGTAATTGCAAGAAATCAAGCTGCCTTAAGAAATACTGTGAATGTTATCAGGGTGGTGTTGGTTGCTCCATAAGCTGCAGATGTGAAGGATGCAAGAACACATATGGTAGAAAGGATGGTTCTGTTCTTTCTGGAATAGAAGCCAAGCCCGAAGAAGAAACAGAAGCCGGTGAAAAGGCTGTGATGGAAAATGCTTCACATAAAACTGAAACACAGAATACTGAAGAGCATCCTGATCATGCTCTTCCTACAACACCATTACGTCTTTCCAGATCATTGATCCCATTACCCTTTTCATCAAAGGGTAAGCCACCAAGATCTTTTGTTACTACCATCTCCAGTTCTGGATTGTTTGTCAGCCAAAAGCTCGGGAAATCAAGTGCTCCGCGGTCTCAACCTAAATTTGAAATGCCTGTGCAAACTATTCCGGATGATGACTCTCCTGTCACCTGCATCAAAACTTCTTCTCCAAATGGCAAGAGGATCTCCTCTCCTAATTGTGACGTGGGATCATCTCCTACTCGCAGAGGTGGGAGGAAGTTGATCTTACAATCTATCCCATCATTTCCGTCTCTCACCCCTCACAATCTTCGAAGTGACTGA 2316 0.421 MDTPDRSKINTPLSQFEDSPVFNYISNLSPIEPVKSVHITQTFNSLSFSSPPSVFTSPHVNCHRESRFLRRHNLLDASKAKGSSEDINNVYSREKTLADSTQLCHESSEPQENTNPNISVRDASNEPRDENPNISIEVPQGLKYNLASPGYEPVICADEADSLLELPGKPGSDVAYVPDDSEKDSIEGEMHIPGLCQNEEKVEGPDCGVDDLIAEASDLLMFSPPNMTEALKDINKQLSPSTKLTNFRTLLGQSATNEGQQMHIVDTVASGSEHEIENHPCESGAATDTVQRQDNHTNVALVANNPMEKVDDKLVYVTHRGIRRRCLDFEMASVQRKNLDGKSNTNSSTEKSDEMDVSKGKQLVPIKHSGDSRKCVLPGIGLHLNALASLNDCKNIKIETLISGRQTNLPSSSSSLQLSASQDHQLSLVPISVEKDLEPSENEVQPGEDCTQPLVHMAGEDLQQNSPKKKRRRLEPDGEGESCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCRDCFNKPIHVDTVLQTRQQIESRNPLAFAPKVIRSSDSVPEIGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNTYGRKDGSVLSGIEAKPEEETEAGEKAVMENASHKTETQNTEEHPDHALPTTPLRLSRSLIPLPFSSKGKPPRSFVTTISSSGLFVSQKLGKSSAPRSQPKFEMPVQTIPDDDSPVTCIKTSSPNGKRISSPNCDVGSSPTRRGGRKLILQSIPSFPSLTPHNLRSD 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03401 771 MobiDBLite consensus disorder prediction 103 135 - -
Viun7g03401 771 MobiDBLite consensus disorder prediction 463 484 - -
Viun7g03401 771 SMART CXC_2 567 608 IPR033467 -
Viun7g03401 771 SMART CXC_2 481 522 IPR033467 -
Viun7g03401 771 MobiDBLite consensus disorder prediction 718 742 - -
Viun7g03401 771 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 766 IPR044522 GO:0003700
Viun7g03401 771 MobiDBLite consensus disorder prediction 618 648 - -
Viun7g03401 771 ProSiteProfiles CRC domain profile. 482 607 IPR005172 -
Viun7g03401 771 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 570 605 IPR005172 -
Viun7g03401 771 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 484 519 IPR005172 -
Viun7g03401 771 MobiDBLite consensus disorder prediction 618 656 - -
Viun7g03401 771 MobiDBLite consensus disorder prediction 457 484 - -
Viun7g03401 771 MobiDBLite consensus disorder prediction 338 360 - -
Viun7g03401 771 MobiDBLite consensus disorder prediction 691 749 - -
Viun7g03401 771 MobiDBLite consensus disorder prediction 103 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03401 Viun-Chr7 35809757 35815472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03401 11 766 CPP Transcription Factor Family AT3G22780 42.416 8.28e-159 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Viun7g03401 TCR 2.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03401 - - var:108326442 1412.51