Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03383 ATGAATCCTCAAGGTCGAGTGAAGGAAGAGTTTCTCGGCGAAAGTTCTTCCTTTTATGGTGGCTATGATCCGCCAACGATAATGATTGTTCCCCAACCAGTTGAGGGGCTCCATGAAACTGGTCCTCCACCATTCCTCACAAAAACATACGACATTGTTGATGACCCTTCCACTGACCATATAATTTCCTGGAGCAAGGGGAACAATAGCTTCGTTGTGTGGGATCCACAGGCCTTTTCCATAACCCTTCTGCCCAGATTCTTCAAGCACAACAATTTCTCCAGTTTTGTCAGGCAACTTAACACCTATGGGTTTAAAAAGGTTGATCCAGATAAGTGGGAGTTTGCGAATGAGATGTTTCTTAGAGGGAAAAGGATTCTTCTGAAGAGCATTAGAAGGAGGAAAACAAATCATCAATCTCATGCGGCGCAGCAAGGGGTGGTGGATCCTTGTGTTGAGGTGGGGCTGTTTGGATTAGATGGAGAGGTTGATAGGTTGAAGCGTGACAGGCAAGTTCTTATGGTGGAGTTGGTGAAACTCAGGCAACAGCAACAGAATACTAGAGTTCACATTCAAGCAATGGAAGGAAGGCTTAAAAAGACTGAGCAGAAACAGCAACAGATGATGAATTTCTTGGCCAGGGCAATGCAGAATCCCAACTTCGTGCAGCAATTGGTTCAGCAAAAGGAGCTGAGAAAGGAGCTCAAGGAAGCTTTTCCTAAGAAGAGGAGGAGTCTTGATCAAGGGCCTAGTAATGTTGTTGTTGAGGTAGGAGAGTTAGATTGCGTTGAAGAGTACTCAAGTTTTGTTAAACTTGAACCACAAGTGTACACTGAGAAGGTGTTGGATTTTGAGGTACCTGATCTTGACCTTGTTTTGAATCTGGAGGAGCAAATTGGAAGCCAAAAGAGAATGGAGGGAGATTATATTCATGTTGAAGGTTTGGATAAAGATATTGATGAAGTGTTTTGGCAAGATTTGCTGAATGAGGGCATTGAAGATCAAGGTGTAATAGGTGTAGATGTATTGGCTCAGCAACTTGGTTATTTGGCCTCAACTTCTAAATAG 1068 0.4335 MNPQGRVKEEFLGESSSFYGGYDPPTIMIVPQPVEGLHETGPPPFLTKTYDIVDDPSTDHIISWSKGNNSFVVWDPQAFSITLLPRFFKHNNFSSFVRQLNTYGFKKVDPDKWEFANEMFLRGKRILLKSIRRRKTNHQSHAAQQGVVDPCVEVGLFGLDGEVDRLKRDRQVLMVELVKLRQQQQNTRVHIQAMEGRLKKTEQKQQQMMNFLARAMQNPNFVQQLVQQKELRKELKEAFPKKRRSLDQGPSNVVVEVGELDCVEEYSSFVKLEPQVYTEKVLDFEVPDLDLVLNLEEQIGSQKRMEGDYIHVEGLDKDIDEVFWQDLLNEGIEDQGVIGVDVLAQQLGYLASTSK 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03383 355 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 31 248 IPR027725 -
Viun7g03383 355 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun7g03383 355 PRINTS Heat shock factor (HSF) domain signature 45 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun7g03383 355 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun7g03383 355 SMART hsfneu3 41 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun7g03383 355 FunFam Heat shock transcription factor 1 38 135 - -
Viun7g03383 355 SUPERFAMILY "Winged helix" DNA-binding domain 41 134 IPR036390 -
Viun7g03383 355 Gene3D - 37 136 IPR036388 -
Viun7g03383 355 Coils Coil 163 183 - -
Viun7g03383 355 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun7g03383 355 Pfam HSF-type DNA-binding 45 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03383 Viun-Chr7 35668205 35670493 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03383 25 354 HSF AT3G22830 54.945 1.21e-126 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Viun7g03383 HSF_DNA-bind 2.3e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03383 K09419 - gmx:100809515 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02798 2 32803503 32807020 Viun7g03383 7 35668205 35670493 PCT