Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03359 ATGCCTTCAGTCTCTCTCTCTGTCACTGACACCACTCTCCAAGAAAACAAGAAGCTAAGCGCCAAGAAAGCCAAAAACCAATCCCCAATCATTGCAGAGAAGAAGAGCGCCTCTAAACTTCTTTCCGATCCCAATACCCCCGATCCCGACCAAGATGGGGTCTCGGGGAAGCTTCAGAAGAAGGCGAAGAAGCGTAAGGCTTCAGATATAGAGGCTATGGCGGCGACCAACGATGCCGACGAAGACACTGGTTCCGAGCTTGTGGAGCCCGAATCTTCTAGAGAAGACGACCACAAGAAGAAGAAAAAGAAGAAAAAGGCCAAGTCCGAGGAACAGCCTTTGGTGATGGAAGCAGAGGAAAAAGAAGAGAAGAAGGAGGATCCTAATGCGGTCTCCAAATTCAGGATATCTGAACCGTTGAGGCTGAAGTTGAAGGAGAAGGGGATTGAATCGTTGTTTCCGATTCAGGCCATGACTTTCGATTTGGTTCTCGACGGTTCTGATTTGGTTGGTCGGGCTCGCACCGGTCAGGGTAAAACTCTGGCATTTGTGCTACCCATATTGGAGTCTTTAATAAATGGTCCGGCTAAGTCTTCTAGAAAGACGGGCTACGGGAGAACTCCAAGCGTTCTTGTGCTTCTTCCAACTAGGGAATTGGCTTGTCAGGTGCATGCTGATTTTGAAGTTTATGGTGGGGCGATGGGATTGAGTTCTTGTTGTTTGTATGGTGGAGCTCCGTATAACACTCAAGAAATTAAGCTTAGAAGAGGTGTTGATATTGTTATTGGCACACCAGGTCGTGTAAAGGATCATATTGAGAGAGGGAATATAGATCTGAGCCAACTGAAATTTCGTGTGCTTGATGAAGCAGATGAAATGCTGAGGATGGGTTTTGTTGAAGATGTTGAGTTGATTCTAGGTAAGGTTGAGAATGTTAATAAAGTTCAGACTCTTCTTTTCAGCGCTACTTTACCAGACTGGGTTAAACATATCGCTGCACAATTTCTGAAGCCAGATAAGAAAACTGCTGACCTTGTTGGAAATACAAAAATGAAGGCTAGTACCAATGTGAGGCATATTGTTCTTCCTTGTTCTGCTTCTGCCAGGTCCCAACTTATCCCGGACATTATTCGGTGTTATAGCAGTGGAGGCCGGACAATTATATTTACCGAGACGAAGGAGTCTGCTTCTCAGCTTGCAGGGTTGTTACCTGGAGCCAGAGCTCTCCATGGTGACATACAACAAGCACAACGTGAGGTTACTCTATCTGGCTTCAGGTCTGGGAAATTCATGACATTAGTTGCTACAAATGTGGCAGCTCGAGGTCTTGATATAAATGATGTTCAGTTAATTATCCAGTGTGAGTTCCCACGGGAGGTAGAGTCCTATATCCATCGTTCTGGACGAACAGGAAGAGCAGGTAATACTGGGGTTGCTGTTACCCTTTATGATCCAAAAAGATCTAATATATCTAAAATAGAAAGAGAGTCCGGTGTAAAATTTGAGCACATATCTGCCCCGCGGCCTGATGATATTGCTAAAGCTGTTGGAGGTGAAGCTGCTGAAATGATTACCCAAGTTTCTGATAGTGTGATTCCTGCATTCAAAGAAACCGCTGAAGAGCTTTTGAAGAGTTCTGGTTTAACAGTTGTTGAATTGCTTGCAAAGGCTCTTGCAAAGGCTGTTGGTTATACCGAAATAAAGCAAAGATCACTTCTCACATCCATGGAGAACTATGTTACATTGCTTCTTGAAATTGGGAAACCAATCTTCACTCCTTCTTTTGCCTATGGAATCTTGAGGAGATTTTTGCCTGAAGAGAAGGTGGAGGCTGTGAAAGGTCTTTCACTCACTGCTGATGGAAATGGTGCAGTTTTTGATGTACCAGCTGAAGATTTAGATACATATCTTAGTGGTCAGGAAAATGCTGCTAATGTAAGTCTAGAGGTATTGAAGGCTCTGCCACGTTTGCAACAGAGAGATCAATCAAGAGGTGGCAGATTTGGTGATGGTGGCCGAGGTGGTGGGAACAGGTTTGGAAGAGGCGGTGGAGGCAGGAACGGTAGATTTTCAAATGATAGGTTTTCCAATGGTGGTGGAAGAGGTGGTCGTGGAAACTGGGGTGGAAAGAGATGGTGA 2139 0.4488 MPSVSLSVTDTTLQENKKLSAKKAKNQSPIIAEKKSASKLLSDPNTPDPDQDGVSGKLQKKAKKRKASDIEAMAATNDADEDTGSELVEPESSREDDHKKKKKKKKAKSEEQPLVMEAEEKEEKKEDPNAVSKFRISEPLRLKLKEKGIESLFPIQAMTFDLVLDGSDLVGRARTGQGKTLAFVLPILESLINGPAKSSRKTGYGRTPSVLVLLPTRELACQVHADFEVYGGAMGLSSCCLYGGAPYNTQEIKLRRGVDIVIGTPGRVKDHIERGNIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVENVNKVQTLLFSATLPDWVKHIAAQFLKPDKKTADLVGNTKMKASTNVRHIVLPCSASARSQLIPDIIRCYSSGGRTIIFTETKESASQLAGLLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEFPREVESYIHRSGRTGRAGNTGVAVTLYDPKRSNISKIERESGVKFEHISAPRPDDIAKAVGGEAAEMITQVSDSVIPAFKETAEELLKSSGLTVVELLAKALAKAVGYTEIKQRSLLTSMENYVTLLLEIGKPIFTPSFAYGILRRFLPEEKVEAVKGLSLTADGNGAVFDVPAEDLDTYLSGQENAANVSLEVLKALPRLQQRDQSRGGRFGDGGRGGGNRFGRGGGGRNGRFSNDRFSNGGGRGGRGNWGGKRW 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03359 712 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 90 543 - -
Viun7g03359 712 CDD DEADc 144 337 - -
Viun7g03359 712 Gene3D - 581 652 - -
Viun7g03359 712 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 371 513 IPR001650 -
Viun7g03359 712 MobiDBLite consensus disorder prediction 16 130 - -
Viun7g03359 712 MobiDBLite consensus disorder prediction 54 71 - -
Viun7g03359 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 486 IPR027417 -
Viun7g03359 712 Gene3D - 75 342 IPR027417 -
Viun7g03359 712 Gene3D - 354 580 IPR027417 -
Viun7g03359 712 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 160 342 IPR014001 -
Viun7g03359 712 SMART ultradead3 148 360 IPR014001 -
Viun7g03359 712 SMART helicmild6 397 474 IPR001650 -
Viun7g03359 712 MobiDBLite consensus disorder prediction 108 130 - -
Viun7g03359 712 Pfam Helicase conserved C-terminal domain 376 474 IPR001650 -
Viun7g03359 712 Pfam GUCT (NUC152) domain 563 658 IPR012562 GO:0003723|GO:0004386|GO:0005524
Viun7g03359 712 Pfam DEAD/DEAH box helicase 153 330 IPR011545 GO:0003676|GO:0005524
Viun7g03359 712 CDD SF2_C_DEAD 357 483 - -
Viun7g03359 712 CDD GUCT_RH7_like 570 655 - -
Viun7g03359 712 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 286 294 IPR000629 -
Viun7g03359 712 MobiDBLite consensus disorder prediction 661 712 - -
Viun7g03359 712 FunFam DEAD-box ATP-dependent RNA helicase 7 580 652 - -
Viun7g03359 712 SUPERFAMILY RNA-binding domain, RBD 567 650 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03359 Viun-Chr7 35478774 35483594 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03359 166 510 Eukaryotic Initiation Factors Gene Family AT1G72730 30.000 6.35e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03359 K16911 - gmx:100805921 1015.37