Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03351 ATGAATCCTTTACACCCTACTGATGAGTTGTACTTTGAGATTACAACTGATAATTACTATTCCCTACCAATCCAAACAACCCCTCCAGAAAATCAGATCTTCTACGATCCTGTCATCGATGCTAGTGCTCCCATTCCGAGTACAGCTCAAATGGGCACTACCAAGGGCAAGCAGAGAGAAAAGTTACCAGCTTGGACAAAGGAAGATTATAAGATCACCACCATGGATGAAAACAAGAGGTGGATCCATAGAGAGACCGAGAAACAAAGAAGGCAAGAAATGACGAGGCTTTGCACCGACTTCAGATCTCTTCTGCCTCTTGAATATATTAAGGGAAAACGCTCAATTTCTGATCACATGCACGAGGGTACGAAATACATCAAACACCTTGAAAATAAAGTGAAAGAGTTGCAAGCAAAGAGAGACAAGTTGAAGAAGTTGTCCGATTTGAGTCCTGTTGTCTCTGATAGTGAAAGCTTTAGCACTACCCATCTTCCAATATGTGTCATTGTTCATCCTTTTCCAGGAGGTGTTCAGATTAAGTGTAGTTACAGCTTCAGAAAATATGTCTTTCCTTTGTCAAGAGTGATACATATGGTTCTTAAAGAAGGGCTTGATGTGCTCAACTGTACCTCCACCAAAACAGATGACAGCTTCATACACACTATCCGATTAGAGGTTCCATATACGATGACTGGGACTGATTACACTGAACTGCAAAGGAAGCTTGTCGCAGCGATATCATCTTCATGTTCGGAGGAGATACTATCTGAATCTAAAAACTGCTGA 789 0.4132 MNPLHPTDELYFEITTDNYYSLPIQTTPPENQIFYDPVIDASAPIPSTAQMGTTKGKQREKLPAWTKEDYKITTMDENKRWIHRETEKQRRQEMTRLCTDFRSLLPLEYIKGKRSISDHMHEGTKYIKHLENKVKELQAKRDKLKKLSDLSPVVSDSESFSTTHLPICVIVHPFPGGVQIKCSYSFRKYVFPLSRVIHMVLKEGLDVLNCTSTKTDDSFIHTIRLEVPYTMTGTDYTELQRKLVAAISSSCSEEILSESKNC 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03351 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 78 130 IPR011598 GO:0046983
Viun7g03351 262 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 77 245 - -
Viun7g03351 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 146 IPR036638 GO:0046983
Viun7g03351 262 Gene3D - 70 154 IPR036638 GO:0046983
Viun7g03351 262 Pfam Helix-loop-helix DNA-binding domain 80 131 IPR011598 GO:0046983
Viun7g03351 262 Coils Coil 120 150 - -
Viun7g03351 262 FunFam Transcription factor bHLH126 70 158 - -
Viun7g03351 262 CDD bHLH_AtORG2_like 79 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03351 Viun-Chr7 35416987 35418493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03351 73 244 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 38.636 1.05e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun7g03351 HLH 1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03351 - - gmx:100803786 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g03351 7 35416987 35418493 Viun7g03351 7 35416987 35418493 ECH
Viun4g02329 4 38924046 38925837 Viun7g03351 7 35416987 35418493 PCT