Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03350 ATGAAGTTTAAATGTTTCAGCTGTTTTCTTTGTGATAAAGAGCAATCCGAGATGCAAAACGGCAGAGAGAAGAAGAAAAGGGACTATCCATGGGAAATATACACCTTGAAGGAATTGCTTCGTGCAACAAATAATTTTCATCAAGATAACAAGATAGGAGAGGGTGGCTTTGGAAGTGTTTATTGGGGTCGAACAAGTAAAGGGGTTGAGATCGCAGTAAAGCGGTTGAAGACGATGACTGCAAAGGCAGAGATGGAGTTTGCGGTGGAAGTGGAAGTACTGGGAAGGGTGAGGCATAAGAATTTGTTGGGGTTGCGTGGATTCTATGCAGGAGGTGATGAAAGGTTGATTGTGTATGATTACATGCCTAATCACAGTTTGCTGAATCATTTGCATGGTCAACTTGCCAAAGATTGTTTGTTAGATTGGCCTAGAAGAATGAACATAGCAATTGGAGCAGCTGAAGGCTTGGTGTATTTGCACCACGAGGCAAATCCTCACATCATTCATAGAGACATAAAGGCAAGCAATGTTCTTTTGGACTCTGAATTTGAAGCGAAGGTTGCTGATTTTGGGTTTGCTAAGCTGATACCAGAGGGTGTGAGCCATCTGACAACAAGGGTTAAAGGCACTCTTGGATATTTGGCTCCAGAATATGCCATGTGGGGGAAGGTTTCTGAGAGCTGTGATGTTTACAGTTTTGGGATTTTGCTTTTGGAGATTGTGAGTGCCAAGAAGCCAATTGAGAAACTCCAAGGAGGAGTGAAAAGGGATATAGTTCAGTGGGTTACACCTCATGTTCAAAAGGGTAACTTCACTCATATTGTTGATTCAAAATTAAAGGGACGATTTGATTTAGAGCAGTTGAAATCTGTGATCATGATAGCTGTAAGGTGCACAGAAAGTAATCCAGAAAAAAGGCCTAGCATGGTAGAGGTGGTGGAGTGGCTCAAGGGTGGCATTGGAAGAAGAAAAGAGATTCTTCCAACTTTAAGTCACACCAATGGAGATGATAAATATGAAGAAAACTACGGAGAGATTAGAAGAACACAGTCCAGGTTGAAAATACCAAGTGATGATGATAAACTTAGAATAAGATAA 1101 0.4124 MKFKCFSCFLCDKEQSEMQNGREKKKRDYPWEIYTLKELLRATNNFHQDNKIGEGGFGSVYWGRTSKGVEIAVKRLKTMTAKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGDERLIVYDYMPNHSLLNHLHGQLAKDCLLDWPRRMNIAIGAAEGLVYLHHEANPHIIHRDIKASNVLLDSEFEAKVADFGFAKLIPEGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIVSAKKPIEKLQGGVKRDIVQWVTPHVQKGNFTHIVDSKLKGRFDLEQLKSVIMIAVRCTESNPEKRPSMVEVVEWLKGGIGRRKEILPTLSHTNGDDKYEENYGEIRRTQSRLKIPSDDDKLRIR 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03350 366 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 5 321 - -
Viun7g03350 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Viun7g03350 366 Gene3D Phosphorylase Kinase; domain 1 9 121 - -
Viun7g03350 366 SMART serkin_6 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g03350 366 ProSiteProfiles Protein kinase domain profile. 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g03350 366 FunFam PTI1-like tyrosine-protein kinase At3g15890 18 121 - -
Viun7g03350 366 Pfam Protein kinase domain 46 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g03350 366 FunFam PTI1-like tyrosine-protein kinase At3g15890 122 331 - -
Viun7g03350 366 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Viun7g03350 366 Gene3D Transferase(Phosphotransferase) domain 1 122 325 - -
Viun7g03350 366 SUPERFAMILY Protein kinase-like (PK-like) 28 332 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03350 Viun-Chr7 35405061 35406872 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03350 22 344 Receptor kinase-like Gene Family AT5G45780 42.342 8.11e-86 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Viun7g03350 Pkinase 8.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03350 - - gmx:100817283 670.618