Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03344 ATGGGAAGAGGGAAGGTGGTTCTGGAGAGAATACAGAACAAGATCAATCGCCAAGTAACCTTCTCCAAGCGCAGAAACGGTTTGCTCAAGAAAGCCTTCGAGTTATCTGTGCTGTGCGATGCTGAAATCGCTCTTATCATCTTCTCCAGTCGTGGCAAGCTTTTTCAGTACAGTAGCACTGACATTAACAGAATCATTGAAAAGTATCGTCAATGCTGCTTCGACATGTCTCAGATCGGCGACGAAGCTGAACTTCAATCGCAGCAGTGCTTATATCAGGAGCTTTTGGTATTAAGAGTCAAGCATGAATCGCTCCAACGAACTCAAAGGAATCTTATGGGAGAAGAACTTGAGCCACTTAACATGAAAGAATTGCATAGCTTGGAGAAACAACTGGATAAAACGCTTGCACAAGCTCGGAAGCACCTATCACAGAAGCTGGTGTCAAAAATTGACGAACTACACGGAAAGGTGCGCAACCTGGAGCAGATTAACAGACATTTGGAGTCAAAGGACATAGCTAAATGCACTCAGATTTGTGAAGATTCTACTAATCAGTTTGAAAGTGGAACAGCAAGTTCGTTGCCGCTTCAGCAGGAGCAAATTACTTCAAAGGGAAAAGAAGTAGAAACGAGGTGCCTTAACGAGAATAACGAATTGCAGCTTTGA 669 0.435 MGRGKVVLERIQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALIIFSSRGKLFQYSSTDINRIIEKYRQCCFDMSQIGDEAELQSQQCLYQELLVLRVKHESLQRTQRNLMGEELEPLNMKELHSLEKQLDKTLAQARKHLSQKLVSKIDELHGKVRNLEQINRHLESKDIAKCTQICEDSTNQFESGTASSLPLQQEQITSKGKEVETRCLNENNELQL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03344 222 Coils Coil 125 145 - -
Viun7g03344 222 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun7g03344 222 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun7g03344 222 ProSiteProfiles K-box domain profile. 88 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun7g03344 222 Coils Coil 151 171 - -
Viun7g03344 222 Gene3D - 13 74 IPR036879 GO:0003677|GO:0046983
Viun7g03344 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 181 - -
Viun7g03344 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Viun7g03344 222 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Viun7g03344 222 FunFam MADS-box transcription factor 1 13 84 - -
Viun7g03344 222 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun7g03344 222 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Viun7g03344 222 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Viun7g03344 222 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun7g03344 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun7g03344 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03344 Viun-Chr7 35326466 35333817 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03344 1 180 MADS-box Gene Family AT3G02310 49.727 8.61e-54 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun7g03344 K-box 4.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03344 K09264 - gmx:100802197 352.829